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BioLiP
Download all results in tab-seperated text for 109 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5yq7:1 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    2 5yq7:3 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    3 5yq7:3 (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    4 5yq7:5 (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    5 5yq7:5 (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    6 5yq7:7 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    7 5yq7:7 (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    8 5yq7:9 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    9 5yq7:9 (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    10 5yq7:A (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    11 5yq7:A (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    12 5yq7:D (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    13 5yq7:D (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    14 5yq7:F (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    15 5yq7:H (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    16 5yq7:H (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    17 5yq7:J (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    18 5yq7:N (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    19 5yq7:P (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    20 5yq7:P (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    21 5yq7:R (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    22 5yq7:R (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    23 5yq7:T (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    24 5yq7:V (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    25 5yq7:W (4.1) BS03 KGD ? GO:0005886 ... Q83XD2 29674684
    26 8hju:0 (2.8) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    27 8hju:0 (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    28 8hju:1 (2.8) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    29 8hju:1 (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    30 8hju:1 (2.8) BS05 KGD ? GO:0005886 ... Q83XD1 37737710
    31 8hju:2 (2.8) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    32 8hju:2 (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    33 8hju:3 (2.8) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    34 8hju:4 (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    35 8hju:5 (2.8) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    36 8hju:6 (2.8) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    37 8hju:6 (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    38 8hju:7 (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    39 8hju:8 (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    40 8hju:8 (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    41 8hju:9 (2.8) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    42 8hju:A (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    43 8hju:A (2.8) BS05 KGD ? GO:0005886 ... Q83XD1 37737710
    44 8hju:B (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    45 8hju:C (2.8) BS01 KGD ? GO:0005506 ... A7NQE7 37737710
    46 8hju:C (2.8) BS03 KGD ? GO:0005506 ... A7NQE7 37737710
    47 8hju:D (2.8) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    48 8hju:E (2.8) BS01 KGD ? GO:0005886 ... A7NQE9 37737710
    49 8hju:E (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    50 8hju:F (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    51 8hju:G (2.8) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    52 8hju:G (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    53 8hju:H (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    54 8hju:I (2.8) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    55 8hju:I (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    56 8hju:J (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    57 8hju:K (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    58 8hju:N (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    59 8hju:O (2.8) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    60 8hju:O (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    61 8hju:P (2.8) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    62 8hju:P (2.8) BS05 KGD ? GO:0005886 ... Q83XD1 37737710
    63 8hju:Q (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    64 8hju:R (2.8) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    65 8hju:R (2.8) BS05 KGD ? GO:0005886 ... Q83XD1 37737710
    66 8hju:S (2.8) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    67 8hju:S (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    68 8hju:T (2.8) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    69 8hju:T (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    70 8hju:U (2.8) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    71 8hju:U (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    72 8hju:V (2.8) BS01 KGD ? GO:0005886 ... Q83XD1 37737710
    73 8hju:W (2.8) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    74 8hjv:9 (3.1) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    75 8hjv:D (3.1) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    76 8hjv:H (3.1) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    77 8hjv:I (3.1) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    78 8hjv:J (3.1) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    79 8hjv:J (3.1) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    80 8hjv:N (3.1) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    81 8j5o:1 (2.9) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    82 8j5o:3 (2.9) BS01 KGD ? GO:0005886 ... Q83XD1 37737710
    83 8j5o:9 (2.9) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    84 8j5o:A (2.9) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    85 8j5o:C (2.9) BS01 KGD ? GO:0005506 ... A7NQE7 37737710
    86 8j5o:C (2.9) BS07 KGD ? GO:0005506 ... A7NQE7 37737710
    87 8j5o:D (2.9) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    88 8j5o:E (2.9) BS01 KGD ? GO:0005886 ... A7NQE9 37737710
    89 8j5o:J (2.9) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    90 8j5o:Q (2.9) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    91 8j5o:R (2.9) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    92 8j5p:1 (3.1) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    93 8j5p:2 (3.1) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    94 8j5p:3 (3.1) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    95 8j5p:7 (3.1) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    96 8j5p:9 (3.1) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    97 8j5p:A (3.1) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    98 8j5p:C (3.1) BS02 KGD ? GO:0005506 ... A7NQE7 37737710
    99 8j5p:E (3.1) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    100 8j5p:I (3.1) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    101 8j5p:I (3.1) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    102 8j5p:J (3.1) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    103 8j5p:K (3.1) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    104 8j5p:P (3.1) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    105 8j5p:Q (3.1) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    106 8j5p:R (3.1) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    107 8j5p:U (3.1) BS01 KGD ? GO:0005886 ... A7NQE9 37737710
    108 8j5p:V (3.1) BS05 KGD ? GO:0005886 ... Q83XD1 37737710
    109 8j5p:W (3.1) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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