Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1v1a:A (2.1) BS01 KDG 2.7.1.45 GO:0000166 ... Q53W83 15210349
    2 1v1a:B (2.1) BS01 KDG 2.7.1.45 GO:0000166 ... Q53W83 15210349
    3 1v1a:B (2.1) BS02 KDG 2.7.1.45 GO:0000166 ... Q53W83 15210349
    4 2qjn:A (2.0) BS02 KDG 4.2.1.8 GO:0000287 ... A4XF23 17944491
    5 2qjn:B (2.0) BS02 KDG 4.2.1.8 GO:0000287 ... A4XF23 17944491
    6 2qjn:C (2.0) BS02 KDG 4.2.1.8 GO:0000287 ... A4XF23 17944491
    7 2qjn:D (2.0) BS02 KDG 4.2.1.8 GO:0000287 ... A4XF23 17944491
    8 2var:A (2.1) BS01 KDG 2.7.1.178 GO:0000166 ... Q97U29 19018105
    9 2var:B (2.1) BS01 KDG 2.7.1.178 GO:0000166 ... Q97U29 19018105
    10 2var:C (2.1) BS01 KDG 2.7.1.178 GO:0000166 ... Q97U29 19018105
    11 3p93:C (1.8) BS02 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    12 3p93:D (1.8) BS02 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    13 3p93:G (1.8) BS02 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    14 3p93:H (1.8) BS02 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    15 4kpl:C (2.0) BS01 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    16 4kpl:D (2.0) BS01 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    17 4kpl:G (2.0) BS01 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    18 4kpl:H (2.0) BS01 KDG 4.2.1.-
    4.2.1.39
    4.2.1.8    		 GO:0000287 ... Q1QT89 N/A
    19 4onv:A (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    20 4onv:B (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    21 4onv:C (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    22 4onv:D (2.57) BS01 KDG 4.1.2.28
    4.1.2.51    		 GO:0005737 ... P75682 N/A
    23 7bbr:A (1.3) BS01 KDG ? GO:0030288 ... R4JTF7 33630388
    24 7etd:A (1.9) BS01 KDG 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    25 7etd:B (1.9) BS01 KDG 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    26 7etd:C (1.9) BS01 KDG 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218