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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 729 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d7r:A (2.0) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    2 1d7s:A (2.05) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    3 1d7u:A (1.95) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    4 1d7v:A (2.8) BS01 K 4.1.1.64 GO:0008453 ... P16932 10556038
    5 1dio:A (2.2) BS01 K 4.2.1.28 GO:0003824 ... Q59470 10467140
    6 1dio:L (2.2) BS01 K 4.2.1.28 GO:0003824 ... Q59470 10467140
    7 1dka:A (2.6) BS01 K 4.1.1.64 GO:0008453 ... P16932 8342040
    8 1dtw:A (2.7) BS02 K 1.2.4.4 GO:0003863 ... P12694 10745006
    9 1dtw:B (2.7) BS01 K 1.2.4.4 GO:0003824 ... P21953 10745006
    10 1fp7:A (3.2) BS01 K 6.3.4.3 GO:0004329 ... P21164 11087401
    11 1fpi:A (2.3) BS01 K 3.1.3.11 GO:0005737 ... P00636 7568043
    12 1fpi:A (2.3) BS02 K 3.1.3.11 GO:0005737 ... P00636 7568043
    13 1fpi:A (2.3) BS03 K 3.1.3.11 GO:0005737 ... P00636 7568043
    14 1fpi:B (2.3) BS01 K 3.1.3.11 GO:0005737 ... P00636 7568043
    15 1fpi:B (2.3) BS02 K 3.1.3.11 GO:0005737 ... P00636 7568043
    16 1fpi:B (2.3) BS03 K 3.1.3.11 GO:0005737 ... P00636 7568043
    17 1gjv:A (2.7) BS01 K 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    18 1gkz:A (2.2) BS01 K 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    19 1gup:A (1.8) BS05 K 2.7.7.12 GO:0004335 ... P09148 9063869
    20 1gup:B (1.8) BS02 K 2.7.7.12 GO:0004335 ... P09148 9063869
    21 1gup:C (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    22 1gup:D (1.8) BS05 K 2.7.7.12 GO:0004335 ... P09148 9063869
    23 1guq:A (1.8) BS03 K 2.7.7.12 GO:0004335 ... P09148 9063869
    24 1guq:B (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    25 1guq:C (1.8) BS03 K 2.7.7.12 GO:0004335 ... P09148 9063869
    26 1guq:D (1.8) BS04 K 2.7.7.12 GO:0004335 ... P09148 9063869
    27 1hpm:A (1.7) BS02 K 3.6.4.10 GO:0005524 ... P19120 7836458
    28 1hpm:A (1.7) BS03 K 3.6.4.10 GO:0005524 ... P19120 7836458
    29 1iwb:A (1.85) BS01 K 4.2.1.28 GO:0003824 ... Q59470 12379103
    30 1iwb:A (1.85) BS02 K 4.2.1.28 GO:0003824 ... Q59470 12379103
    31 1iwb:A (1.85) BS03 K 4.2.1.28 GO:0003824 ... Q59470 12379103
    32 1iwb:L (1.85) BS01 K 4.2.1.28 GO:0003824 ... Q59470 12379103
    33 1iwb:L (1.85) BS02 K 4.2.1.28 GO:0003824 ... Q59470 12379103
    34 1iwb:L (1.85) BS03 K 4.2.1.28 GO:0003824 ... Q59470 12379103
    35 1jjw:A (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    36 1jjw:B (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    37 1jjw:C (1.9) BS01 K 3.4.25.2 GO:0004298 ... P43772 11717526
    38 1krj:A (2.0) BS01 K 1.11.1.5 GO:0004601 ... P00431 10608846
    39 1me9:A (2.2) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    40 1meh:A (1.95) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    41 1mei:A (2.2) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    42 1mew:A (2.15) BS01 K 1.1.1.205 GO:0000166 ... P50097 12559919
    43 1nhi:A (2.0) BS01 K ? GO:0005524 ... P23367 12782329
    44 1r64:A (2.2) BS05 K 3.4.21.61 GO:0004252 ... P13134 14992578
    45 1r64:A (2.2) BS06 K 3.4.21.61 GO:0004252 ... P13134 14992578
    46 1r64:B (2.2) BS02 K 3.4.21.61 GO:0004252 ... P13134 14992578
    47 1r64:B (2.2) BS06 K 3.4.21.61 GO:0004252 ... P13134 14992578
    48 1r64:B (2.2) BS07 K 3.4.21.61 GO:0004252 ... P13134 14992578
    49 1rxc:A (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    50 1rxc:B (2.35) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    51 1rxc:C (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    52 1rxc:D (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    53 1rxc:E (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    54 1rxc:F (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    55 1rxc:I (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    56 1rxc:J (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    57 1rxc:K (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    58 1rxc:L (2.35) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    59 1rxs:A (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    60 1rxs:B (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    61 1rxs:C (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    62 1rxs:D (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    63 1rxs:E (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    64 1rxs:F (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    65 1rxs:G (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    66 1rxs:H (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    67 1rxs:I (2.8) BS03 K 2.4.2.3 GO:0003824 ... P12758 15003451
    68 1rxs:J (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    69 1rxs:K (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    70 1rxs:L (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    71 1rxs:M (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    72 1rxs:N (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    73 1rxs:O (2.8) BS03 K 2.4.2.3 GO:0003824 ... P12758 15003451
    74 1rxs:P (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    75 1rxs:Q (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    76 1rxs:R (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    77 1rxs:a (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    78 1rxs:b (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    79 1rxs:c (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    80 1rxs:d (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    81 1rxs:e (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    82 1rxs:h (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    83 1rxs:i (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    84 1rxs:j (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    85 1rxs:k (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    86 1rxs:l (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    87 1rxs:m (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    88 1rxs:o (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    89 1rxu:A (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    90 1rxu:B (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    91 1rxu:C (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    92 1rxu:D (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    93 1rxu:E (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    94 1rxu:F (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    95 1rxu:G (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    96 1rxu:H (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    97 1rxu:I (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    98 1rxu:J (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    99 1rxu:K (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    100 1rxu:L (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    101 1rxu:M (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    102 1rxu:N (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    103 1rxu:O (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    104 1rxu:P (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    105 1rxu:Q (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    106 1rxu:R (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    107 1rxy:A (1.7) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    108 1rxy:B (1.7) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    109 1u12:A (2.7) BS01 K ? GO:0005221 ... Q98GN8 15550244
    110 1u12:B (2.7) BS01 K ? GO:0005221 ... Q98GN8 15550244
    111 1w22:A (2.5) BS02 K 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 15477595
    112 1w22:A (2.5) BS03 K 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 15477595
    113 1w22:B (2.5) BS03 K 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 15477595
    114 1w22:B (2.5) BS04 K 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 15477595
    115 1wcf:A (1.54) BS01 K 3.6.1.1 GO:0000287 ... P9WI55 21821883
    116 1wcf:A (1.54) BS02 K 3.6.1.1 GO:0000287 ... P9WI55 21821883
    117 2b5w:A (1.6) BS02 K 1.1.1.47 GO:0000166 ... Q977U7 16551747
    118 2b5w:A (1.6) BS03 K 1.1.1.47 GO:0000166 ... Q977U7 16551747
    119 2b5w:A (1.6) BS04 K 1.1.1.47 GO:0000166 ... Q977U7 16551747
    120 2fca:A (2.1) BS01 K 2.1.1.33 GO:0006400 ... O34522 16600901
    121 2fca:A (2.1) BS02 K 2.1.1.33 GO:0006400 ... O34522 16600901
    122 2fca:B (2.1) BS01 K 2.1.1.33 GO:0006400 ... O34522 16600901
    123 2fca:B (2.1) BS02 K 2.1.1.33 GO:0006400 ... O34522 16600901
    124 2fxi:A (1.8) BS01 K 1.20.4.4 GO:0004725 ... P0A006 16797027
    125 2gj8:A (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    126 2gj8:B (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    127 2gj8:C (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    128 2gj8:D (1.7) BS03 K 3.6.-.- GO:0005525 ... P25522 16763562
    129 2ib8:A (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    130 2ib8:B (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    131 2ib8:C (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    132 2ib8:D (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    133 2ib9:A (2.05) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    134 2ib9:B (2.05) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    135 2ib9:C (2.05) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    136 2ib9:D (2.05) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    137 2ibw:A (1.9) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    138 2ibw:B (1.9) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    139 2ibw:C (1.9) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    140 2ibw:D (1.9) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    141 2iby:A (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    142 2iby:B (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    143 2iby:C (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    144 2iby:D (1.85) BS01 K 2.3.1.9 GO:0001889 ... P24752 17371050
    145 2j41:B (1.9) BS01 K 2.7.4.8 GO:0004385 ... Q5HGM3 17012781
    146 2j41:C (1.9) BS01 K 2.7.4.8 GO:0004385 ... Q5HGM3 17012781
    147 2j41:D (1.9) BS02 K 2.7.4.8 GO:0004385 ... Q5HGM3 17012781
    148 2qv6:A (2.0) BS03 K 3.5.4.29 GO:0005525 ... Q57609 18052207
    149 2qv6:B (2.0) BS03 K 3.5.4.29 GO:0005525 ... Q57609 18052207
    150 2qv6:C (2.0) BS01 K 3.5.4.29 GO:0005525 ... Q57609 18052207
    151 2qv6:D (2.0) BS01 K 3.5.4.29 GO:0005525 ... Q57609 18052207
    152 2qv6:D (2.0) BS03 K 3.5.4.29 GO:0005525 ... Q57609 18052207
    153 2zxe:A (2.4) BS03 K ? GO:0000166 ... Q4H132 19458722
    154 2zxe:A (2.4) BS04 K ? GO:0000166 ... Q4H132 19458722
    155 2zxe:A (2.4) BS05 K ? GO:0000166 ... Q4H132 19458722
    156 3a3y:A (2.8) BS03 K ? GO:0000166 ... Q4H132 19666591
    157 3a3y:A (2.8) BS04 K ? GO:0000166 ... Q4H132 19666591
    158 3a3y:A (2.8) BS05 K ? GO:0000166 ... Q4H132 19666591
    159 3c33:A (1.72) BS01 K ? GO:0015276 ... P22756 18549784
    160 3c33:B (1.72) BS01 K ? GO:0015276 ... P22756 18549784
    161 3crk:A (2.3) BS01 K 2.7.11.2 GO:0004672 ... Q64536 18387944
    162 3crk:B (2.3) BS01 K 2.7.11.2 GO:0004672 ... Q64536 18387944
    163 3crl:A (2.61) BS02 K 2.7.11.2 GO:0004672 ... Q64536 18387944
    164 3crl:B (2.61) BS01 K 2.7.11.2 GO:0004672 ... Q64536 18387944
    165 3fd5:A (1.9) BS05 K 2.7.9.3 GO:0004756 ... P49903 19477186
    166 3fd5:B (1.9) BS06 K 2.7.9.3 GO:0004756 ... P49903 19477186
    167 3fgo:A (2.5) BS03 K 7.2.2.10 GO:0000166 ... P04191 19289472
    168 3fgo:B (2.5) BS03 K 7.2.2.10 GO:0000166 ... P04191 19289472
    169 3fpb:A (2.55) BS03 K 7.2.2.10 GO:0000166 ... P04191 19289472
    170 3fwp:A (1.86) BS01 K 2.4.2.3 GO:0003824 ... P0A1F6 20057049
    171 3fwp:B (1.86) BS02 K 2.4.2.3 GO:0003824 ... P0A1F6 20057049
    172 3fwp:C (1.86) BS01 K 2.4.2.3 GO:0003824 ... P0A1F6 20057049
    173 3fwp:D (1.86) BS01 K 2.4.2.3 GO:0003824 ... P0A1F6 20057049
    174 3fwp:E (1.86) BS01 K 2.4.2.3 GO:0003824 ... P0A1F6 20057049
    175 3fwp:F (1.86) BS01 K 2.4.2.3 GO:0003824 ... P0A1F6 20057049
    176 3pjz:A (3.506) BS01 K ? GO:0005267 ... Q87TN7 21317882
    177 3pjz:B (3.506) BS01 K ? GO:0005267 ... Q87TN7 21317882
    178 3ss8:A (2.51) BS02 K ? GO:0005525 ... Q5M586 21858085
    179 3ss8:B (2.51) BS02 K ? GO:0005525 ... Q5M586 21858085
    180 3ukm:A (3.4) BS01 K ? GO:0005267 ... O00180 22282804
    181 3ukm:A (3.4) BS02 K ? GO:0005267 ... O00180 22282804
    182 3ukm:A (3.4) BS03 K ? GO:0005267 ... O00180 22282804
    183 3ukm:A (3.4) BS04 K ? GO:0005267 ... O00180 22282804
    184 3ukm:B (3.4) BS01 K ? GO:0005267 ... O00180 22282804
    185 3ukm:B (3.4) BS02 K ? GO:0005267 ... O00180 22282804
    186 3ukm:B (3.4) BS03 K ? GO:0005267 ... O00180 22282804
    187 3ukm:B (3.4) BS04 K ? GO:0005267 ... O00180 22282804
    188 3ukm:C (3.4) BS01 K ? GO:0005267 ... O00180 22282804
    189 3ukm:C (3.4) BS02 K ? GO:0005267 ... O00180 22282804
    190 3ukm:C (3.4) BS03 K ? GO:0005267 ... O00180 22282804
    191 3ukm:C (3.4) BS04 K ? GO:0005267 ... O00180 22282804
    192 3ukm:D (3.4) BS01 K ? GO:0005267 ... O00180 22282804
    193 3ukm:D (3.4) BS02 K ? GO:0005267 ... O00180 22282804
    194 3ukm:D (3.4) BS03 K ? GO:0005267 ... O00180 22282804
    195 3ukm:D (3.4) BS04 K ? GO:0005267 ... O00180 22282804
    196 3um7:A (3.31) BS01 K ? GO:0005267 ... Q9NYG8 22282805
    197 3um7:A (3.31) BS02 K ? GO:0005267 ... Q9NYG8 22282805
    198 3um7:A (3.31) BS03 K ? GO:0005267 ... Q9NYG8 22282805
    199 3um7:A (3.31) BS04 K ? GO:0005267 ... Q9NYG8 22282805
    200 3um7:B (3.31) BS01 K ? GO:0005267 ... Q9NYG8 22282805
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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