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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ht9:A (2.02) BS01 JZ3 3.2.1.17 GO:0003796 ... P00720 19782087
    2 4a6z:A (1.61) BS02 JZ3 1.11.1.5 GO:0004601 ... P00431 22093282
    3 4a6z:A (1.61) BS03 JZ3 1.11.1.5 GO:0004601 ... P00431 22093282
    4 4a78:A (2.01) BS02 JZ3 1.11.1.5 GO:0004601 ... P00431 22093282
    5 4g05:A (2.35) BS04 JZ3 1.11.1.16 GO:0000302 ... O94753 23071108
    6 4qoq:A (1.7) BS03 JZ3 N/A GO:0004096 ... N/A 25663126
    7 4qoq:B (1.7) BS03 JZ3 N/A GO:0004096 ... N/A 25663126
    8 4qoq:B (1.7) BS04 JZ3 N/A GO:0004096 ... N/A 25663126
    9 4qoq:C (1.7) BS03 JZ3 N/A GO:0004096 ... N/A 25663126
    10 4qoq:D (1.7) BS03 JZ3 N/A GO:0004096 ... N/A 25663126
    11 4qoq:D (1.7) BS04 JZ3 N/A GO:0004096 ... N/A 25663126
    12 5ncb:A (1.44) BS02 JZ3 ? GO:0004497 ... A0A076MY51 29950589
    13 6hqk:A (1.57) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 31235604 MOAD: Kd=7.1uM
    14 6hql:A (1.49) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    15 6hqm:A (1.85) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    16 6hqn:A (1.87) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    17 6hqo:A (1.7) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    18 6hqp:A (1.62) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 31235604
    19 6krf:A (1.86) BS02 JZ3 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    20 6ych:A (1.88) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    21 6yci:A (1.8) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    22 6ycj:A (1.64) BS02 JZ3 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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