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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6mhu:F (4.0) BS01 JSG ? GO:0005515 ... P0AF98 30894744
    2 6mhu:G (4.0) BS01 JSG ? GO:0005515 ... P0ADC6 30894744
    3 6s8h:F (3.7) BS02 JSG ? GO:0005886 ... P0AFA1 31519889
    4 6s8h:G (3.7) BS01 JSG ? GO:0005886 ... A0A0H2V3J7 31519889
    5 7efo:F (3.85) BS01 JSG ? GO:0005886 ... A0A1Y0Q3P9 34303191
    6 7efo:G (3.85) BS01 JSG ? GO:0005886 ... A0A1Y0Q3C0 34303191
    7 8frl:F (3.2) BS02 JSG ? GO:0005886 ... Q6FFD7 38172635
    8 8frl:G (3.2) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    9 8frm:F (3.14) BS01 JSG ? GO:0005886 ... Q6FFD7 38172635
    10 8frm:G (3.14) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    11 8frn:F (3.3) BS01 JSG ? GO:0005886 ... Q6FFD7 38172635
    12 8frn:G (3.3) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    13 8fro:F (3.25) BS01 JSG ? GO:0005886 ... Q6FFD7 38172635
    14 8fro:G (3.25) BS01 JSG ? GO:0005886 ... Q6FFD6 38172635
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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