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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mu8:A (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    2 5mu8:A (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    3 5mu8:B (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    4 5mu8:B (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    5 5mu8:C (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    6 5mu8:D (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    7 5mu8:F (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    8 5mu8:G (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    9 5mu8:G (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    10 5mu8:H (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    11 5mu8:I (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    12 5mu8:J (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    13 5mu8:K (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    14 5mu8:L (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    15 5mu8:L (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    16 5mu8:M (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    17 5mu8:M (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    18 5mu8:N (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    19 5mu8:O (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    20 5mu8:Q (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    21 5mu8:Q (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    22 5mu8:R (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    23 5mu8:S (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    24 5mu8:U (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    25 5mu8:V (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    26 5mu8:W (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    27 5mu8:X (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    28 5mu8:Y (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    29 5mu8:Y (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    30 5mu8:Z (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    31 5mu8:a (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    32 5mu8:a (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    33 5mu8:b (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    34 5mu8:c (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    35 5mu8:c (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    36 5mu8:d (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    37 5mu8:d (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    38 5mu8:e (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    39 5mu8:f (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    40 5mu8:h (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    41 5mu8:i (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    42 5mu8:j (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    43 5mu8:l (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    44 5mu8:m (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    45 5mu8:m (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    46 5mu8:n (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    47 5mu8:o (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    48 5mu8:p (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    49 5mu8:q (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    50 5mu8:q (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    51 5mu8:r (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    52 5mu8:r (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    53 5mu8:t (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    54 5mu8:u (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    55 5mu8:u (3.0) BS02 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    56 5mu8:v (3.0) BS01 JNI ? GO:0005164 ... P01375 28300404 BindingDB: IC50=1200nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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