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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ngx:A (1.8) BS01 JEF N/A N/A N/A 12552112
    2 1ngx:B (1.8) BS01 JEF N/A N/A N/A 12552112
    3 1ngx:H (1.8) BS01 JEF N/A N/A N/A 12552112
    4 1ngx:L (1.8) BS01 JEF N/A N/A N/A 12552112
    5 2w3x:A (1.75) BS01 JEF ? N/A Q8KNG2 19357082
    6 3gwo:A (1.65) BS01 JEF ? GO:0005198 ... Q70626 19846514
    7 3hfr:A (2.3) BS01 JEF 5.1.1.3 GO:0008360 ... Q8Y7N7 N/A
    8 3hfr:A (2.3) BS02 JEF 5.1.1.3 GO:0008360 ... Q8Y7N7 N/A
    9 3hfr:B (2.3) BS01 JEF 5.1.1.3 GO:0008360 ... Q8Y7N7 N/A
    10 4d59:A (1.84) BS02 JEF N/A GO:0006508 ... N/A 25760704
    11 4d59:B (1.84) BS02 JEF N/A GO:0006508 ... N/A 25760704
    12 5d75:A (1.83) BS02 JEF 5.2.1.8 GO:0003755 ... Q00688 26749369
    13 5d75:A (1.83) BS03 JEF 5.2.1.8 GO:0003755 ... Q00688 26749369
    14 5fv8:D (1.99) BS01 JEF ? GO:0003677 ... P05412 N/A
    15 5fv8:E (1.99) BS01 JEF ? GO:0003677 ... P05412 N/A
    16 5osw:A (1.78) BS07 JEF ? GO:0005576 ... B3VHM9 29095162
    17 6a9t:A (2.15) BS04 JEF 3.4.11.26 GO:0030145 ... P40051 30582634
    18 6m5e:A (2.8) BS02 JEF ? GO:0003677 ... P02768 33183011
    19 6m5e:A (2.8) BS03 JEF ? GO:0003677 ... P02768 33183011
    20 6m5e:B (2.8) BS04 JEF ? GO:0003677 ... P02768 33183011
    21 6m5e:B (2.8) BS05 JEF ? GO:0003677 ... P02768 33183011
    22 6m5e:C (2.8) BS03 JEF ? GO:0003677 ... P02768 33183011
    23 6ws6:A (3.3) BS01 JEF N/A N/A N/A 32422645
    24 6ws6:C (3.3) BS01 JEF N/A N/A N/A 32422645
    25 7l99:C (1.9) BS04 JEF ? N/A Q58F21 33637650
    26 7l99:D (1.9) BS03 JEF ? N/A Q58F21 33637650
    27 7pv0:A (2.15) BS01 JEF ? N/A G0S140
    G0SHY5    		 36044574
    28 7pv0:B (2.15) BS01 JEF ? N/A G0S140
    G0SHY5    		 36044574
    29 8b7x:A (1.42) BS01 JEF N/A GO:0006826 ... N/A 37428843
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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