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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8q3v:A (2.08) BS01 JCV N/A GO:0005886 ... P80184 38530900
    2 8q3v:A (2.08) BS02 JCV N/A GO:0005886 ... P80184 38530900
    3 8q3v:B (2.08) BS02 JCV N/A GO:0005886 ... Q59584 38530900
    4 8q3v:C (2.08) BS01 JCV N/A GO:0005886 ... P80185 38530900
    5 8q3v:E (2.08) BS01 JCV N/A GO:0005886 ... P80186 38530900
    6 8q3v:E (2.08) BS02 JCV N/A GO:0005886 ... P80186 38530900
    7 8q3v:F (2.08) BS01 JCV N/A GO:0005886 ... Q50773 38530900
    8 8q3v:F (2.08) BS02 JCV N/A GO:0005886 ... Q50773 38530900
    9 8q3v:G (2.08) BS01 JCV N/A GO:0005886 ... Q50774 38530900
    10 8q3v:G (2.08) BS02 JCV N/A GO:0005886 ... Q50774 38530900
    11 8q3v:Q (2.08) BS01 JCV N/A GO:0005886 ... P80184 38530900
    12 8q3v:Q (2.08) BS02 JCV N/A GO:0005886 ... P80184 38530900
    13 8q3v:Q (2.08) BS03 JCV N/A GO:0005886 ... P80184 38530900
    14 8q3v:R (2.08) BS01 JCV N/A GO:0005886 ... Q59584 38530900
    15 8q3v:S (2.08) BS01 JCV N/A GO:0005886 ... P80185 38530900
    16 8q3v:U (2.08) BS01 JCV N/A GO:0005886 ... P80186 38530900
    17 8q3v:U (2.08) BS02 JCV N/A GO:0005886 ... P80186 38530900
    18 8q3v:U (2.08) BS03 JCV N/A GO:0005886 ... P80186 38530900
    19 8q3v:U (2.08) BS04 JCV N/A GO:0005886 ... P80186 38530900
    20 8q3v:V (2.08) BS01 JCV N/A GO:0005886 ... Q50773 38530900
    21 8q3v:V (2.08) BS02 JCV N/A GO:0005886 ... Q50773 38530900
    22 8q3v:W (2.08) BS01 JCV N/A GO:0005886 ... Q50774 38530900
    23 8q3v:W (2.08) BS02 JCV N/A GO:0005886 ... Q50774 38530900
    24 8q3v:a (2.08) BS01 JCV N/A GO:0005886 ... P80184 38530900
    25 8q3v:a (2.08) BS02 JCV N/A GO:0005886 ... P80184 38530900
    26 8q3v:a (2.08) BS03 JCV N/A GO:0005886 ... P80184 38530900
    27 8q3v:b (2.08) BS02 JCV N/A GO:0005886 ... Q59584 38530900
    28 8q3v:b (2.08) BS03 JCV N/A GO:0005886 ... Q59584 38530900
    29 8q3v:c (2.08) BS01 JCV N/A GO:0005886 ... P80185 38530900
    30 8q3v:d (2.08) BS01 JCV N/A GO:0005886 ... P80183 38530900
    31 8q3v:e (2.08) BS01 JCV N/A GO:0005886 ... P80186 38530900
    32 8q3v:e (2.08) BS02 JCV N/A GO:0005886 ... P80186 38530900
    33 8q3v:e (2.08) BS03 JCV N/A GO:0005886 ... P80186 38530900
    34 8q3v:f (2.08) BS01 JCV N/A GO:0005886 ... Q50773 38530900
    35 8q3v:f (2.08) BS02 JCV N/A GO:0005886 ... Q50773 38530900
    36 8q3v:g (2.08) BS01 JCV N/A GO:0005886 ... Q50774 38530900
    37 8q3v:g (2.08) BS02 JCV N/A GO:0005886 ... Q50774 38530900
    38 8q54:A (2.39) BS01 JCV N/A N/A P80184 N/A
    39 8q54:A (2.39) BS02 JCV N/A N/A P80184 N/A
    40 8q54:B (2.39) BS02 JCV N/A N/A Q59584 N/A
    41 8q54:C (2.39) BS01 JCV N/A N/A P80185 N/A
    42 8q54:C (2.39) BS02 JCV N/A N/A P80185 N/A
    43 8q54:E (2.39) BS02 JCV N/A N/A P80186 N/A
    44 8q54:E (2.39) BS03 JCV N/A N/A P80186 N/A
    45 8q54:E (2.39) BS04 JCV N/A N/A P80186 N/A
    46 8q54:F (2.39) BS01 JCV N/A N/A Q50773 N/A
    47 8q54:F (2.39) BS02 JCV N/A N/A Q50773 N/A
    48 8q54:G (2.39) BS01 JCV N/A N/A Q50774 N/A
    49 8q54:G (2.39) BS02 JCV N/A N/A Q50774 N/A
    50 8q54:Q (2.39) BS01 JCV N/A N/A P80184 N/A
    51 8q54:Q (2.39) BS02 JCV N/A N/A P80184 N/A
    52 8q54:R (2.39) BS02 JCV N/A N/A Q59584 N/A
    53 8q54:S (2.39) BS01 JCV N/A N/A P80185 N/A
    54 8q54:U (2.39) BS01 JCV N/A N/A P80186 N/A
    55 8q54:U (2.39) BS03 JCV N/A N/A P80186 N/A
    56 8q54:U (2.39) BS04 JCV N/A N/A P80186 N/A
    57 8q54:U (2.39) BS05 JCV N/A N/A P80186 N/A
    58 8q54:V (2.39) BS01 JCV N/A N/A Q50773 N/A
    59 8q54:V (2.39) BS02 JCV N/A N/A Q50773 N/A
    60 8q54:W (2.39) BS01 JCV N/A N/A Q50774 N/A
    61 8q54:a (2.39) BS01 JCV N/A N/A P80184 N/A
    62 8q54:a (2.39) BS02 JCV N/A N/A P80184 N/A
    63 8q54:b (2.39) BS02 JCV N/A N/A Q59584 N/A
    64 8q54:c (2.39) BS01 JCV N/A N/A P80185 N/A
    65 8q54:c (2.39) BS02 JCV N/A N/A P80185 N/A
    66 8q54:e (2.39) BS01 JCV N/A N/A P80186 N/A
    67 8q54:e (2.39) BS03 JCV N/A N/A P80186 N/A
    68 8q54:e (2.39) BS04 JCV N/A N/A P80186 N/A
    69 8q54:e (2.39) BS05 JCV N/A N/A P80186 N/A
    70 8q54:f (2.39) BS01 JCV N/A N/A Q50773 N/A
    71 8q54:g (2.39) BS01 JCV N/A N/A Q50774 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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