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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5qrd:B (1.76) BS02 J4Q 2.3.1.37 GO:0003870 ... P22557 N/A
    2 6qje:A (2.4) BS03 J4Q 2.7.1.6 GO:0004335 ... P51570 N/A
    3 6qje:B (2.4) BS03 J4Q 2.7.1.6 GO:0004335 ... P51570 N/A
    4 6qje:D (2.4) BS01 J4Q 2.7.1.6 GO:0004335 ... P51570 N/A
    5 7h2c:A (1.399) BS01 J4Q 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004252 ... Q32ZE1 N/A
    6 7h2c:B (1.399) BS01 J4Q 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 N/A
    7 7h2c:B (1.399) BS02 J4Q 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 N/A
    8 7h2c:B (1.399) BS03 J4Q 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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