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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qhm:A (2.8) BS03 IZL ? GO:0005886 ... Q79VE8 35087070
    2 7qhm:B (2.8) BS01 IZL 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    3 7qhm:N (2.8) BS05 IZL ? GO:0005886 ... Q79VE8 35087070
    4 7qhm:O (2.8) BS02 IZL 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    5 7qho:A (3.1) BS03 IZL ? GO:0005886 ... Q79VE8 35087070
    6 7qho:B (3.1) BS01 IZL 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    7 7qho:N (3.1) BS05 IZL ? GO:0005886 ... Q79VE8 35087070
    8 7qho:O (3.1) BS03 IZL 7.1.1.8 GO:0005886 ... Q79VE9 35087070
    9 8ovd:G (2.3) BS05 IZL N/A GO:0005886 ... A0R051 38902248
    10 8ovd:H (2.3) BS06 IZL N/A GO:0008121 ... A0R052 38902248
    11 8ovd:M (2.3) BS03 IZL N/A GO:0005886 ... A0R051 38902248
    12 8ovd:N (2.3) BS03 IZL N/A GO:0008121 ... A0R052 38902248
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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