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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3aq0:A (2.65) BS04 ISY 2.5.1.85 GO:0004659 ... Q5HZ00 21220764
    2 3aq0:H (2.65) BS04 ISY 2.5.1.85 GO:0004659 ... Q5HZ00 21220764
    3 5hc8:A (1.87) BS03 ISY 2.5.1.- GO:0002094 ... A0A140UHQ1 26922900
    4 6ime:A (1.55) BS03 ISY 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 30950820
    5 6ime:B (1.55) BS03 ISY 2.5.1.86
    2.5.1.87    		 GO:0000287 ... P9WFF7 30950820
    6 7pb0:A (2.301) BS01 ISY 2.5.1.87 GO:0002094 ... Q86SQ9 35584224
    7 7pb1:A (2.59) BS02 ISY 2.5.1.87 GO:0002094 ... Q86SQ9 35584224
    8 7pb1:B (2.59) BS01 ISY 2.5.1.87 GO:0016765 ... Q96E22 35584224
    9 7vq9:A (1.89) BS01 ISY ? GO:0016094 ... Q8TPS4 35764165
    10 7vq9:B (1.89) BS01 ISY ? GO:0016094 ... Q8TPS4 35764165
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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