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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1oja:A (1.7) BS02 ISN 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 12913124 MOAD: Ki=3uM
    BindingDB: IC50=18750nM, Ki=3000nM
    2 1oja:B (1.7) BS02 ISN 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 12913124 MOAD: Ki=3uM
    BindingDB: IC50=18750nM, Ki=3000nM
    3 2bk5:A (1.83) BS02 ISN 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15710600 MOAD: Ki=3uM
    BindingDB: IC50=18750nM, Ki=3000nM
    4 2bk5:B (1.83) BS02 ISN 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15710600 MOAD: Ki=3uM
    BindingDB: IC50=18750nM, Ki=3000nM
    5 2xfp:A (1.66) BS02 ISN 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 20855894 BindingDB: IC50=18750nM, Ki=3000nM
    6 2xfp:B (1.66) BS02 ISN 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 20855894 BindingDB: IC50=18750nM, Ki=3000nM
    7 5oji:A (1.6) BS02 ISN 1.1.1.184 GO:0003824 ... G5EGA6 29151266
    8 5oji:B (1.6) BS02 ISN 1.1.1.184 GO:0003824 ... G5EGA6 29151266
    9 5ph6:A (1.742) BS02 ISN 1.14.11.66 N/A Q6B0I6 28436492
    10 5ph6:A (1.742) BS03 ISN 1.14.11.66 N/A Q6B0I6 28436492
    11 5rtf:B (1.0) BS01 ISN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    12 6af5:A (1.65) BS01 ISN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 30063823
    13 6af9:A (1.39) BS01 ISN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 30063823 PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    14 6af9:A (1.39) BS02 ISN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 30063823 PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    15 6af9:A (1.39) BS03 ISN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 30063823 PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    16 6afa:A (1.65) BS01 ISN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 30063823 PDBbind: -logKd/Ki=5.49, Kd=3.2uM
    17 6afb:A (1.6) BS01 ISN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 30063823
    18 6afb:A (1.6) BS02 ISN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0000785 ... Q99497 30063823
    19 7h8y:A (1.91) BS01 ISN 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    20 7h8y:B (1.91) BS01 ISN 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    21 7h8y:B (1.91) BS02 ISN 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    22 7h8y:C (1.91) BS01 ISN 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    23 7h8y:D (1.91) BS01 ISN 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A Q8JUX6 N/A
    24 8ak9:A (1.95) BS03 ISN 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    25 8ak9:B (1.95) BS03 ISN 2.3.1.-
    2.3.1.286
    2.4.2.-    		 GO:0070403 ... Q8N6T7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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