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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rqi:A (2.42) BS04 IPR 2.5.1.10 GO:0004161 ... P22939 14672944
    2 1rqi:B (2.42) BS04 IPR 2.5.1.10 GO:0004161 ... P22939 14672944
    3 2for:A (2.0) BS01 IPR 2.5.1.10 GO:0004337 ... A0A0H2UXE9 N/A
    4 2for:B (2.0) BS01 IPR 2.5.1.10 GO:0004337 ... A0A0H2UXE9 N/A
    5 2zrw:A (2.4) BS02 IPR 5.3.3.2 GO:0000287 ... P61615 19158086
    6 2zrw:B (2.4) BS02 IPR 5.3.3.2 GO:0000287 ... P61615 19158086
    7 2zrw:C (2.4) BS02 IPR 5.3.3.2 GO:0000287 ... P61615 19158086
    8 2zrw:D (2.4) BS02 IPR 5.3.3.2 GO:0000287 ... P61615 19158086
    9 3dyf:A (2.65) BS04 IPR 2.5.1.10 GO:0004161 ... Q86C09 19309137
    10 3dyf:B (2.65) BS04 IPR 2.5.1.10 GO:0004161 ... Q86C09 19309137
    11 4h5e:F (2.04) BS02 IPR 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 23234314 PDBbind: -logKd/Ki=6.07, Kd=0.86uM
    12 5hxp:A (1.95) BS01 IPR 2.5.1.92 GO:0016765 ... B8XA40 30023621
    13 5hxp:A (1.95) BS02 IPR 2.5.1.92 GO:0016765 ... B8XA40 30023621
    14 5hxp:C (1.95) BS03 IPR 2.5.1.92 GO:0016765 ... B8XA40 30023621
    15 5hxp:C (1.95) BS04 IPR 2.5.1.92 GO:0016765 ... B8XA40 30023621
    16 5hxt:A (2.15) BS02 IPR 2.5.1.92 GO:0016765 ... B8XA40 N/A
    17 5hxt:B (2.15) BS02 IPR 2.5.1.92 GO:0016765 ... B8XA40 N/A
    18 6dbz:A (1.9) BS01 IPR 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 30127411
    19 6dbz:B (1.9) BS01 IPR 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 30127411
    20 6vjc:A (1.8) BS03 IPR 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    21 6vjc:B (1.8) BS03 IPR 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    22 6w7i:A (2.1) BS03 IPR 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    23 6w7i:B (2.1) BS03 IPR 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    24 6ww1:A (2.05) BS03 IPR 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    25 6ww1:B (2.05) BS03 IPR 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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