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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a05:A (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q56268 9739088
    2 1a05:B (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q56268 9739088
    3 1hj6:A (2.0) BS01 IPM 1.1.1.42 GO:0000287 ... P08200 11284679
    4 2y41:A (2.2) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 21387033
    5 2y41:B (2.2) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 21387033
    6 2y41:B (2.2) BS02 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 21387033
    7 3vkz:A (1.84) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    8 3vl2:A (2.06) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    9 3vl3:A (1.8) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    10 3vl4:A (1.88) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    11 3vl6:A (2.07) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    12 3vl7:A (2.2) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22349232
    13 3vmj:A (1.56) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 22442218
    14 3vmk:A (1.48) BS01 IPM 1.1.1.85 GO:0000287 ... D2YZL2 22442218
    15 3vmk:A (1.48) BS02 IPM 1.1.1.85 GO:0000287 ... D2YZL2 22442218
    16 3vmk:B (1.48) BS01 IPM 1.1.1.85 GO:0000287 ... D2YZL2 22442218
    17 3vmk:B (1.48) BS02 IPM 1.1.1.85 GO:0000287 ... D2YZL2 22442218
    18 3vml:A (1.56) BS01 IPM 1.1.1.85 GO:0000287 ... D2YZL2
    Q8E9N3    		 N/A
    19 3wzv:A (1.9) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 N/A
    20 3wzw:A (1.8) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 N/A
    21 3wzx:A (1.9) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 N/A
    22 3wzy:A (1.55) BS01 IPM 1.1.1.85 GO:0000287 ... Q8E9N3 N/A
    23 4f7i:A (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25211160
    24 4f7i:B (2.0) BS02 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25211160
    25 4f7i:C (2.0) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25211160
    26 4f7i:D (2.0) BS02 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25211160
    27 4wuo:A (2.05) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25497013
    28 4wuo:B (2.05) BS01 IPM 1.1.1.85 GO:0000287 ... Q5SIY4 25497013
    29 4y1p:A (2.2) BS01 IPM 1.1.1.85 GO:0000287 ... Q4JB37 27590116
    30 4y1p:B (2.2) BS01 IPM 1.1.1.85 GO:0000287 ... Q4JB37 27590116
    31 5hn6:A (2.5) BS01 IPM ? GO:0000287 ... Q5JFV8 27831491
    32 5j32:A (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927 MOAD: Kd=8.3uM
    PDBbind: -logKd/Ki=5.08, Kd=8.3uM
    33 5j32:B (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927 PDBbind: -logKd/Ki=5.08, Kd=8.3uM
    34 5j32:C (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927 MOAD: Kd=8.3uM
    35 5j32:D (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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