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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1awb:A (2.5) BS03 IPD 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    2 1awb:B (2.5) BS03 IPD 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    3 1g0h:A (2.3) BS03 IPD 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4 1g0h:B (2.3) BS03 IPD 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    5 1ima:A (2.3) BS01 IPD 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068620
    6 1ima:B (2.3) BS01 IPD 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 8068620
    7 1lbx:A (2.4) BS03 IPD 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    8 1lbx:B (2.4) BS03 IPD 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 11940584
    9 2ork:B (1.89) BS04 IPD ? N/A P35247 17417879 MOAD: ic50=1.4mM
    PDBbind: -logKd/Ki=2.85, IC50=1.4mM
    10 2ork:C (1.89) BS04 IPD ? N/A P35247 17417879 MOAD: ic50=1.4mM
    11 3ikp:B (1.75) BS04 IPD ? N/A P35247 19799916
    12 3ikp:C (1.75) BS04 IPD ? N/A P35247 19799916
    13 4rw3:A (1.72) BS02 IPD 4.6.1.- GO:0005576 ... P0CE82 25961401
    14 5f24:A (2.5) BS03 IPD 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    15 5f24:B (2.5) BS03 IPD 3.1.3.25 GO:0000166 ... Q2FVV7 26894675
    16 5j16:A (2.4) BS03 IPD ? GO:0006020 ... A0A1I9GET0 N/A
    17 5j16:B (2.4) BS03 IPD ? GO:0006020 ... A0A1I9GET0 N/A
    18 5j16:C (2.4) BS03 IPD ? GO:0006020 ... A0A1I9GET0 N/A
    19 7js5:A (2.5) BS01 IPD 3.1.4.4 GO:0003824 ... Q53728 33843991
    20 7js7:A (2.3) BS01 IPD 3.1.4.4 GO:0003824 ... Q53728 33843991
    21 7js7:B (2.3) BS01 IPD 3.1.4.4 GO:0003824 ... Q53728 33843991
    22 8wdq:A (2.2) BS01 IPD N/A N/A Q9HXI4 N/A
    23 8wdq:B (2.2) BS01 IPD N/A N/A Q9HXI4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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