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BioLiP
Download all results in tab-seperated text for 74 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aod:A (2.6) BS01 INS 4.6.1.13 GO:0004436 ... P34024 9367761
    2 1g0i:A (2.4) BS05 INS 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    3 1g0i:B (2.4) BS05 INS 3.1.3.11
    3.1.3.25    		 GO:0006020 ... Q57573 11170378
    4 1iev:A (2.8) BS01 INS 3.2.1.21 GO:0004553 ... Q9XEI3 11709165
    5 1ptg:A (2.6) BS01 INS 4.6.1.13 GO:0004436 ... P14262 7664726
    6 1y7v:A (2.4) BS01 INS 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46    		 GO:0004336 ... P04062 15817452
    7 1y7v:B (2.4) BS01 INS 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46    		 GO:0004336 ... P04062 15817452
    8 2huo:A (2.0) BS04 INS 1.13.99.1 GO:0004033 ... Q9QXN5 17012379
    9 2os9:A (1.7) BS04 INS ? N/A P35247 17417879 PDBbind: -logKd/Ki=2.24, IC50=5.7mM
    10 2os9:B (1.7) BS04 INS ? N/A P35247 17417879
    11 2os9:C (1.7) BS04 INS ? N/A P35247 17417879
    12 2r71:A (2.07) BS03 INS 3.4.21.- GO:0005576 ... P24627 N/A
    13 2r71:A (2.07) BS04 INS 3.4.21.- GO:0005576 ... P24627 N/A
    14 2x1i:A (2.36) BS01 INS 2.4.1.25 GO:0004134 ... Q2VJA0 21117235
    15 2x1i:A (2.36) BS02 INS 2.4.1.25 GO:0004134 ... Q2VJA0 21117235
    16 3bxd:A (2.0) BS03 INS 1.13.99.1 GO:0004033 ... Q9QXN5 18364358 MOAD: Ki=62uM
    17 3ea2:A (1.95) BS01 INS 4.6.1.13 GO:0004436 ... P08954 19369255
    18 3ea2:B (1.95) BS01 INS 4.6.1.13 GO:0004436 ... P08954 19369255
    19 3nt4:A (2.5001) BS02 INS 1.1.1.18
    1.1.1.369    		 GO:0000166 ... P26935 20809899
    20 3nt4:B (2.5001) BS02 INS 1.1.1.18
    1.1.1.369    		 GO:0000166 ... P26935 20809899
    21 3ntr:A (2.6503) BS02 INS 1.1.1.18
    1.1.1.369    		 GO:0000166 ... P26935 20809899
    22 3ntr:B (2.6503) BS02 INS 1.1.1.18
    1.1.1.369    		 GO:0000166 ... P26935 20809899
    23 3v16:A (2.05) BS01 INS 4.6.1.13 GO:0006629 ... P45723 22390775
    24 3v1h:A (1.9) BS01 INS 4.6.1.13 GO:0006629 ... P45723 22390775
    25 4f2b:A (2.16) BS01 INS 4.6.1.13 GO:0006629 ... P45723 23038258
    26 4f2b:B (2.16) BS01 INS 4.6.1.13 GO:0006629 ... P45723 23038258
    27 4i9t:A (2.0) BS01 INS 4.6.1.13 GO:0006629 ... P45723 23576432
    28 4i9t:A (2.0) BS02 INS 4.6.1.13 GO:0006629 ... P45723 23576432
    29 4irx:A (1.451) BS01 INS ? N/A A0A0H3C834 23504019 MOAD: Kd=0.76uM
    PDBbind: -logKd/Ki=6.12, Kd=0.76uM
    30 4irx:B (1.451) BS01 INS ? N/A A0A0H3C834 23504019 MOAD: Kd=0.76uM
    31 4mio:D (1.5) BS02 INS 1.1.1.18
    1.1.1.369    		 GO:0000166 ... A0A0J9X1Y2 N/A
    32 4miy:D (1.42) BS02 INS 1.1.1.18
    1.1.1.369    		 GO:0000166 ... A0A0J9X1Y2 N/A
    33 4ru1:A (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    34 4ru1:B (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    35 4ru1:C (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    36 4ru1:D (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    37 4ru1:E (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    38 4ru1:F (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    39 4ru1:G (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    40 4ru1:H (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    41 4ru1:I (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    42 4ru1:J (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    43 4ru1:K (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    44 4ru1:L (1.5) BS01 INS ? GO:0030246 ... A0LVW8 N/A
    45 4rv3:A (2.0) BS01 INS 4.6.1.13 GO:0006629 ... P45723 26092728
    46 4rxm:A (1.75) BS01 INS N/A N/A N/A N/A
    47 4rxm:B (1.75) BS01 INS N/A N/A N/A N/A
    48 4s3g:A (2.5) BS01 INS 4.6.1.13 GO:0006629 ... P45723 26092728
    49 4wre:A (1.751) BS03 INS ? N/A P08427 28719181
    50 4wuw:A (2.398) BS01 INS ? N/A P08427 28719181
    51 4xf6:A (2.08) BS03 INS 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    52 4xf6:B (2.08) BS03 INS 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    53 4xf7:A (1.93) BS01 INS 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    54 4xf7:B (1.93) BS01 INS 2.7.1.64 GO:0000166 ... Q5JDA3 25972008
    55 4yo7:A (1.7) BS02 INS ? GO:0030246 ... Q9KAG4 N/A
    56 5fyr:A (1.45) BS01 INS ? GO:0006629 ... A0A1S4NYD4 28045383
    57 5fyr:B (1.45) BS01 INS ? GO:0006629 ... A0A1S4NYD4 28045383
    58 5fyr:C (1.45) BS01 INS ? GO:0006629 ... A0A1S4NYD4 28045383
    59 5fyr:D (1.45) BS01 INS ? GO:0006629 ... A0A1S4NYD4 28045383
    60 5ya8:A (2.3) BS02 INS ? GO:0000166 ... K7ZP76 29799855
    61 5ya8:B (2.3) BS02 INS ? GO:0000166 ... K7ZP76 29799855
    62 5ya8:D (2.3) BS02 INS ? GO:0000166 ... K7ZP76 29799855
    63 5ysp:A (1.7) BS01 INS ? N/A Q9WYP6 29720581
    64 5ysp:B (1.7) BS01 INS ? N/A Q9WYP6 29720581
    65 5ysq:A (1.47) BS01 INS ? N/A Q9WYP6 29720581
    66 5ysq:B (1.47) BS01 INS ? N/A Q9WYP6 29720581
    67 6b5z:A (2.3) BS04 INS 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    68 6b5z:B (2.3) BS05 INS 3.1.3.11
    3.1.3.25    		 GO:0006020 ... O30298 N/A
    69 6ktl:D (1.65) BS02 INS ? GO:0000166 ... K7ZP76 31842701
    70 6s2a:A (2.7) BS01 INS 4.6.1.13 GO:0004436 ... P14262 N/A
    71 6s2a:B (2.7) BS01 INS 4.6.1.13 GO:0004436 ... P14262 N/A
    72 6s2a:C (2.7) BS01 INS 4.6.1.13 GO:0004436 ... P14262 N/A
    73 6x7z:A (1.0) BS05 INS ? N/A A1YIY3 33824212
    74 7d5n:B (1.8) BS02 INS ? GO:0000166 ... C1DLC3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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