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BioLiP
Download all results in tab-seperated text for 667 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 8qqv:A (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    602 8qqv:B (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    603 8qqv:C (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    604 8qqv:D (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    605 8qqv:E (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    606 8qqv:F (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    607 8qqv:G (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    608 8qqv:H (2.99) BS01 IMP N/A N/A A0QSU3 39107302
    609 8qqx:A (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    610 8qqx:B (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    611 8qqx:C (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    612 8qqx:D (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    613 8qqx:E (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    614 8qqx:F (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    615 8qqx:G (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    616 8qqx:H (3.01) BS01 IMP N/A N/A A0QSU3 39107302
    617 8qwa:A (1.85) BS01 IMP N/A N/A P56137 39149761
    618 8u7m:A (3.1) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    619 8u7m:B (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    620 8u7m:C (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    621 8u7m:D (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    622 8u7m:E (3.1) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    623 8u7m:F (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    624 8u7m:G (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    625 8u7m:H (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    626 8u7q:A (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    627 8u7q:B (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    628 8u7q:C (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    629 8u7q:D (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    630 8u7q:E (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    631 8u7q:F (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    632 8u7q:G (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    633 8u7q:H (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    634 8u7v:A (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    635 8u7v:B (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    636 8u7v:C (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    637 8u7v:D (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    638 8u7v:E (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    639 8u7v:F (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    640 8u7v:G (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    641 8u7v:H (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    642 8u8o:A (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    643 8u8o:B (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    644 8u8o:C (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    645 8u8o:D (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    646 8u8o:E (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    647 8u8o:F (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    648 8u8o:G (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    649 8u8o:H (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    650 8u8y:A (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    651 8u8y:B (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    652 8u8y:C (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    653 8u8y:D (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    654 8u8y:E (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    655 8u8y:F (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    656 8u8y:G (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    657 8u8y:H (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    658 9c4m:A (2.48) BS01 IMP N/A N/A P31002 39235234
    659 9c4m:B (2.48) BS02 IMP N/A N/A P31002 39235234
    660 9c4m:C (2.48) BS02 IMP N/A N/A P31002 39235234
    661 9c4m:D (2.48) BS02 IMP N/A N/A P31002 39235234
    662 9c4m:E (2.48) BS01 IMP N/A N/A P31002 39235234
    663 9c4m:F (2.48) BS02 IMP N/A N/A P31002 39235234
    664 9c4m:G (2.48) BS02 IMP N/A N/A P31002 39235234
    665 9c4m:H (2.48) BS02 IMP N/A N/A P31002 39235234
    666 9f17:A (1.7) BS03 IMP N/A N/A P56137 39062851
    667 9f17:B (1.7) BS02 IMP N/A N/A P56137 39062851
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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