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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h74:A (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    2 1h74:B (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    3 1h74:C (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    4 1h74:D (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    5 1z17:A (1.96) BS01 ILE ? GO:0006865 ... P0AD96 15850393 MOAD: Kd=0.9uM
    6 2aji:A (3.2) BS01 ILE 6.1.1.4 GO:0000166 ... P07813 16277600
    7 2aji:B (3.2) BS01 ILE 6.1.1.4 GO:0000166 ... P07813 16277600
    8 2b18:A (1.8) BS01 ILE ? GO:0003677 ... P39779 16488888
    9 2tpi:Z (2.1) BS01 ILE 3.4.21.4 GO:0004175 ... P00760 N/A PDBbind: -logKd/Ki=4.31, Kd=49uM
    10 2whz:A (1.75) BS01 ILE 3.4.24.27 GO:0004222 ... P00800 N/A
    11 2z4p:A (1.95) BS01 ILE ? GO:0005515 ... O73983 17937921
    12 2z4p:B (1.95) BS01 ILE ? GO:0005515 ... O73983 17937921
    13 2z4p:C (1.95) BS01 ILE ? GO:0005515 ... O73983 17937921
    14 2z4p:D (1.95) BS01 ILE ? GO:0005515 ... O73983 17937921
    15 2zbc:A (1.9) BS01 ILE ? N/A Q975W5 18300246
    16 2zbc:A (1.9) BS02 ILE ? N/A Q975W5 18300246
    17 2zbc:B (1.9) BS01 ILE ? N/A Q975W5 18300246
    18 2zbc:B (1.9) BS02 ILE ? N/A Q975W5 18300246
    19 2zbc:C (1.9) BS01 ILE ? N/A Q975W5 18300246
    20 2zbc:C (1.9) BS02 ILE ? N/A Q975W5 18300246
    21 2zbc:D (1.9) BS01 ILE ? N/A Q975W5 18300246
    22 2zbc:D (1.9) BS02 ILE ? N/A Q975W5 18300246
    23 2zbc:E (1.9) BS01 ILE ? N/A Q975W5 18300246
    24 2zbc:E (1.9) BS02 ILE ? N/A Q975W5 18300246
    25 2zbc:F (1.9) BS01 ILE ? N/A Q975W5 18300246
    26 2zbc:F (1.9) BS02 ILE ? N/A Q975W5 18300246
    27 2zbc:G (1.9) BS01 ILE ? N/A Q975W5 18300246
    28 2zbc:H (1.9) BS01 ILE ? N/A Q975W5 18300246
    29 3b3t:A (1.17) BS03 ILE 3.4.11.10 GO:0006508 ... Q01693 18576673
    30 3f6g:A (2.0) BS01 ILE 2.3.3.21 GO:0003852 ... Q8F3Q1 19351325 PDBbind: -logKd/Ki=4.72, Ki=19uM
    31 3f6g:A (2.0) BS02 ILE 2.3.3.21 GO:0003852 ... Q8F3Q1 19351325 PDBbind: -logKd/Ki=4.72, Ki=19uM
    32 3f6g:B (2.0) BS01 ILE 2.3.3.21 GO:0003852 ... Q8F3Q1 19351325 PDBbind: -logKd/Ki=4.72, Ki=19uM
    33 3f6g:B (2.0) BS02 ILE 2.3.3.21 GO:0003852 ... Q8F3Q1 19351325 PDBbind: -logKd/Ki=4.72, Ki=19uM
    34 3f6h:A (2.7) BS01 ILE 2.3.3.21 GO:0003852 ... Q8F3Q1 19351325 PDBbind: -logKd/Ki=4.72, Ki=19uM
    35 3f6h:B (2.7) BS01 ILE 2.3.3.21 GO:0003852 ... Q8F3Q1 19351325
    36 3jw7:A (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    37 3jw7:B (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    38 3jw7:C (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    39 3jw7:D (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    40 3jw7:E (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    41 3jw7:F (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    42 3jw7:G (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    43 3jw7:H (1.8) BS01 ILE 5.1.1.- GO:0000287 ... Q834W6 22392983
    44 3tpi:Z (1.9) BS01 ILE 3.4.21.4 GO:0004175 ... P00760 N/A
    45 4flg:A (1.31) BS04 ILE 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 22963370
    46 4gnr:A (1.0) BS01 ILE ? GO:0006865 ... J9PBT7 N/A
    47 4il5:A (2.03) BS01 ILE 2.5.1.47 GO:0004124 ... O15570 23747298
    48 4oat:A (1.199) BS01 ILE ? GO:0046872 ... Q3MFZ5 N/A
    49 4oat:B (1.199) BS01 ILE ? GO:0046872 ... Q3MFZ5 N/A
    50 4oz9:A (2.24) BS01 ILE 4.2.2.n1 GO:0000270 ... Q9HXN1 N/A
    51 4xmr:A (1.3) BS01 ILE ? N/A Q0P864 26457436 PDBbind: -logKd/Ki=4.07, Kd=86uM
    52 4xmr:B (1.3) BS01 ILE ? N/A Q0P864 26457436
    53 5b0w:A (1.7) BS03 ILE N/A GO:0005216 ... N/A 27352034
    54 5eck:A (1.54) BS01 ILE 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    55 5eck:D (1.54) BS01 ILE 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    56 5ecl:A (1.85) BS02 ILE 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    57 5ecl:D (1.85) BS02 ILE 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    58 5ey0:A (1.6) BS01 ILE ? GO:0003677 ... A7X1N2 27596595
    59 5ey0:B (1.6) BS01 ILE ? GO:0003677 ... A7X1N2 27596595
    60 5ey1:A (2.0) BS01 ILE ? GO:0003677 ... A7X1N2 27596595
    61 5ey1:B (2.0) BS01 ILE ? GO:0003677 ... A7X1N2 27596595
    62 5loe:A (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    63 5loe:B (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    64 5loe:C (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    65 5loe:D (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    66 5n0l:A (1.68) BS01 ILE ? GO:0003677 ... Q18BE1 30699117
    67 5n0l:B (1.68) BS01 ILE ? GO:0003677 ... Q18BE1 30699117
    68 5n0l:C (1.68) BS01 ILE ? GO:0003677 ... Q18BE1 30699117
    69 5n0l:D (1.68) BS01 ILE ? GO:0003677 ... Q18BE1 30699117
    70 5n0l:E (1.68) BS01 ILE ? GO:0003677 ... Q18BE1 30699117
    71 5n0l:F (1.68) BS01 ILE ? GO:0003677 ... Q18BE1 30699117
    72 5t65:A (2.2) BS01 ILE ? N/A G3XD24 N/A
    73 5t65:B (2.2) BS01 ILE ? N/A G3XD24 N/A
    74 5vja:D (2.46) BS01 ILE 2.7.11.1 GO:0004672 ... O43293 30033129
    75 5yp3:A (2.44) BS01 ILE 3.4.14.5 GO:0006508 ... Q6F3I7 29426867
    76 5yp3:B (2.44) BS01 ILE 3.4.14.5 GO:0006508 ... Q6F3I7 29426867
    77 5yp3:C (2.44) BS01 ILE 3.4.14.5 GO:0006508 ... Q6F3I7 29426867
    78 5yp3:D (2.44) BS01 ILE 3.4.14.5 GO:0006508 ... Q6F3I7 29426867
    79 5yum:A (2.432) BS01 ILE 2.2.1.6 GO:0003984 ... P0ADF8 30887800 PDBbind: -logKd/Ki=3.65, Ki=223uM
    80 6bv2:A (2.14) BS01 ILE 3.4.11.2 GO:0001525 ... P15145 28465619
    81 6ghx:A (1.156) BS05 ILE 3.4.24.27 GO:0004222 ... P43133 30403288
    82 6ghx:A (1.156) BS06 ILE 3.4.24.27 GO:0004222 ... P43133 30403288
    83 6ldk:A (2.9) BS02 ILE 6.1.1.5 GO:0000049 ... Q59RI1 32088946
    84 6lzn:A (1.5) BS06 ILE 3.4.24.27 GO:0004222 ... P00800 33310458
    85 6py3:A (1.9) BS01 ILE ? N/A Q3K7T6 31909676
    86 6py3:B (1.9) BS01 ILE ? N/A Q3K7T6 31909676
    87 6sel:A (2.2) BS02 ILE 3.4.24.27 GO:0004222 ... P00800 N/A
    88 6yu2:A (3.1) BS01 ILE ? GO:0016020 ... Q9KDT3 33155685
    89 6yu2:B (3.1) BS01 ILE ? GO:0016020 ... Q9KDT3 33155685
    90 7aag:C (1.79) BS01 ILE 3.1.4.53 GO:0004114 ... Q08499 N/A
    91 7fby:A (2.001) BS01 ILE ? GO:0003677 ... O57880 N/A
    92 8c7s:A (3.05) BS04 ILE ? GO:0003677 ... Q2FHI3 37326020
    93 8c7s:B (3.05) BS04 ILE ? GO:0003677 ... Q2FHI3 37326020
    94 8g7p:z (2.9) BS03 ILE ? GO:0003746 ... E2QJ06 38538914
    95 8g7q:z (3.1) BS04 ILE ? GO:0003746 ... E2QJ06 38538914
    96 8w8h:A (3.2) BS01 ILE N/A N/A N/A N/A
    97 8w8h:A (3.2) BS02 ILE N/A N/A N/A N/A
    98 8w8h:B (3.2) BS01 ILE N/A N/A N/A N/A
    99 8w8h:B (3.2) BS02 ILE N/A N/A N/A N/A
    100 8w8h:C (3.2) BS01 ILE N/A N/A N/A N/A
    101 8w8h:C (3.2) BS02 ILE N/A N/A N/A N/A
    102 8w8h:D (3.2) BS01 ILE N/A N/A N/A N/A
    103 8w8h:D (3.2) BS02 ILE N/A N/A N/A N/A
    104 8wng:A (1.92) BS01 ILE 6.1.1.5 GO:0000049 ... P56456 38246751
    105 8zm4:A (1.4) BS06 ILE 3.4.24.27 N/A P00800 N/A
    106 8zm5:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    107 8zm6:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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