Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lr8:A (2.1) BS01 IHS ? N/A P21674 12867435 MOAD: Kd=10nM
    2 1u25:A (2.5) BS01 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    3 1u25:A (2.5) BS02 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    4 1u25:A (2.5) BS03 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    5 1u25:C (2.5) BS01 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    6 1u25:C (2.5) BS02 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    7 1u26:A (2.5) BS01 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    8 1u26:A (2.5) BS02 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    9 1u26:B (2.5) BS01 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    10 1u26:B (2.5) BS02 IHS 3.1.3.72 GO:0016311 ... Q7WUJ1 15530366
    11 3amr:A (1.25) BS01 IHS 3.1.3.8 GO:0005576 ... O31097 21463636
    12 3ams:A (2.08) BS01 IHS 3.1.3.8 GO:0005576 ... O31097 21463636
    13 3k4q:A (2.2) BS01 IHS 3.1.3.-
    3.1.3.8    		 GO:0003993 ... P34752 20541524 MOAD: Ki=4.6uM
    PDBbind: -logKd/Ki=5.34, Ki=4.6uM
    14 3k4q:B (2.2) BS01 IHS 3.1.3.-
    3.1.3.8    		 GO:0003993 ... P34752 20541524 MOAD: Ki=4.6uM
    15 4aro:A (1.59) BS01 IHS 3.1.3.26 GO:0016311 ... H9TUK5 23741456 PDBbind: -logKd/Ki=6.80, Kd~160nM
    16 4aro:A (1.59) BS02 IHS 3.1.3.26 GO:0016311 ... H9TUK5 23741456 PDBbind: -logKd/Ki=6.80, Kd~160nM
    17 4fdu:A (2.293) BS01 IHS ? GO:0016787 ... Q89YI8 24529702
    18 4fdu:B (2.293) BS01 IHS ? GO:0016787 ... Q89YI8 24529702
    19 4tsr:A (2.07) BS01 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 N/A
    20 6gj2:A (1.68) BS04 IHS 3.1.3.2 GO:0003993 ... F6MIW5 35529950
    21 6rxe:A (1.84) BS01 IHS ? N/A B7GTV0 33454010
    22 6rxe:B (1.84) BS01 IHS ? N/A B7GTV0 33454010
    23 7r5y:A (1.97) BS01 IHS ? GO:0016787 ... R7PD89 N/A
    24 7r5y:B (1.97) BS01 IHS ? GO:0016787 ... R7PD89 N/A
    25 7r5y:C (1.97) BS01 IHS ? GO:0016787 ... R7PD89 N/A
    26 7r5y:D (1.97) BS01 IHS ? GO:0016787 ... R7PD89 N/A
    27 7r5y:E (1.97) BS01 IHS ? GO:0016787 ... R7PD89 N/A
    28 7r5y:F (1.97) BS01 IHS ? GO:0016787 ... R7PD89 N/A
    29 7z2s:A (1.72) BS01 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 35683026
    30 7z2t:A (1.41) BS01 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 35683026
    31 7z2w:A (1.42) BS01 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 35683026
    32 7z2y:A (1.86) BS01 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 35683026
    33 7z2y:A (1.86) BS02 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 35683026
    34 7z3v:A (2.6) BS01 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 35683026
    35 7z3v:A (2.6) BS02 IHS 3.1.3.-
    3.6.1.-    		 GO:0003924 ... P07102 35683026
    36 7zgh:A (1.41) BS01 IHS N/A N/A N/A N/A
    37 7zgh:B (1.41) BS01 IHS N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218