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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 388 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6zwm:B (3.2) BS02 IHP 2.7.11.1 GO:0000139 ... P42345 33158864
    202 6zwo:B (3.0) BS02 IHP 2.7.11.1 GO:0000139 ... P42345 33158864
    203 6zym:A (3.4) BS07 IHP ? GO:0000398 ... Q6P2Q9 33007253
    204 7abf:A (3.9) BS04 IHP ? GO:0000244 ... Q6P2Q9 33243851
    205 7abf:K (3.9) BS03 IHP ? GO:0000398 ... P55081 33243851
    206 7ao8:A (4.5) BS01 IHP ? GO:0000122 ... Q13330 33264408
    207 7ao8:B (4.5) BS01 IHP 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q13547 33264408
    208 7ao8:D (4.5) BS01 IHP ? GO:0000122 ... Q13330 33264408
    209 7ao8:E (4.5) BS01 IHP 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q13547 33264408
    210 7ao9:A (6.1) BS01 IHP ? GO:0000122 ... Q13330 33264408
    211 7ao9:B (6.1) BS01 IHP 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q13547 33264408
    212 7ao9:D (6.1) BS01 IHP ? GO:0000122 ... Q13330 33264408
    213 7ao9:E (6.1) BS01 IHP 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q13547 33264408
    214 7aoa:A (19.4) BS01 IHP ? GO:0000122 ... Q13330 33264408
    215 7aoa:B (19.4) BS01 IHP 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q13547 33264408
    216 7aoa:D (19.4) BS01 IHP ? GO:0000122 ... Q13330 33264408
    217 7aoa:E (19.4) BS01 IHP 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q13547 33264408
    218 7aui:A (1.98) BS01 IHP 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    219 7auu:A (2.45) BS01 IHP 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0016462 ... Q99321 33893105
    220 7dco:A (2.5) BS06 IHP N/A GO:0000398 ... N/A 33243853
    221 7dnu:A (2.245) BS01 IHP 3.1.3.-
    3.6.1.52    		 GO:0003723 ... P32092 35481780
    222 7dvq:A (2.89) BS06 IHP ? GO:0000244 ... Q6P2Q9 33509932
    223 7e1i:A (3.301) BS01 IHP ? GO:0005198 ... T2CJ20 N/A
    224 7e1i:B (3.301) BS01 IHP ? GO:0005198 ... T2CJ20 N/A
    225 7e1i:D (3.301) BS01 IHP ? GO:0005198 ... T2CJ20 N/A
    226 7e1i:E (3.301) BS01 IHP ? GO:0005198 ... T2CJ20 N/A
    227 7e1i:I (3.301) BS01 IHP ? GO:0005198 ... T2CJ20 N/A
    228 7e1j:A (2.72) BS01 IHP ? GO:0005198 ... P12493 N/A
    229 7e1j:B (2.72) BS01 IHP ? GO:0005198 ... P12493 N/A
    230 7e1j:C (2.72) BS01 IHP ? GO:0005198 ... P12493 N/A
    231 7e1j:D (2.72) BS01 IHP ? GO:0005198 ... P12493 N/A
    232 7e1j:E (2.72) BS01 IHP ? GO:0005198 ... P12493 N/A
    233 7e1k:A (2.4) BS01 IHP ? GO:0005198 ... T2CJ20 N/A
    234 7e40:B (2.6) BS01 IHP 3.2.1.17 GO:0003796 ... D9IEF7
    Q69XJ0    		 34857773
    235 7e40:B (2.6) BS02 IHP 3.2.1.17 GO:0003796 ... D9IEF7
    Q69XJ0    		 34857773
    236 7e40:D (2.6) BS01 IHP 3.2.1.17 GO:0003796 ... D9IEF7
    Q69XJ0    		 34857773
    237 7f1w:A (3.097) BS01 IHP ? GO:0001664 ... P08168 34678158
    238 7f1w:B (3.097) BS01 IHP ? GO:0001664 ... P08168 34678158
    239 7f1w:D (3.097) BS01 IHP ? GO:0001664 ... P08168 34678158
    240 7jtb:B (2.6) BS01 IHP ? GO:0001664 ... P08168 34678158
    241 7jtb:C (2.6) BS01 IHP ? GO:0001664 ... P08168 34678158
    242 7jtb:D (2.6) BS01 IHP ? GO:0001664 ... P08168 34678158
    243 7k36:I (3.3) BS01 IHP ? GO:0003674 ... Q5VSL9 33633399
    244 7k6w:A (2.3) BS01 IHP ? N/A C4XPJ9 N/A
    245 7k6w:B (2.3) BS01 IHP ? N/A C4XPJ9 N/A
    246 7k6w:C (2.3) BS01 IHP ? N/A C4XPJ9 N/A
    247 7k6w:D (2.3) BS01 IHP ? N/A C4XPJ9 N/A
    248 7kfn:A (2.5) BS03 IHP 3.5.4.37 GO:0003723 ... P78563 33939417
    249 7kfn:D (2.5) BS01 IHP 3.5.4.37 GO:0003723 ... P78563 33939417
    250 7ktr:A (2.93) BS01 IHP ? N/A Q9Y4A5 34811519
    251 7l1k:A (3.16) BS02 IHP 2.3.1.256 GO:0000822 ... O74311 34019809
    252 7l1k:B (3.16) BS01 IHP ? GO:0003674 ... Q9USY3 34019809
    253 7mof:A (1.95) BS02 IHP 3.1.3.48 GO:0006470 ... Q9ZVN4 35468885
    254 7naq:c (3.2) BS01 IHP ? GO:0000502 ... Q14997 35858375
    255 7oho:AAA (2.88) BS01 IHP ? GO:0005794 ... P18484 35486718
    256 7or0:A (2.64) BS03 IHP ? GO:0005216 ... O75762 N/A
    257 7or0:B (2.64) BS03 IHP ? GO:0005216 ... O75762 N/A
    258 7or0:C (2.64) BS03 IHP ? GO:0005216 ... O75762 N/A
    259 7or0:D (2.64) BS01 IHP ? GO:0005216 ... O75762 N/A
    260 7or1:A (2.64) BS03 IHP ? GO:0005216 ... O75762 N/A
    261 7or1:B (2.64) BS03 IHP ? GO:0005216 ... O75762 N/A
    262 7or1:C (2.64) BS03 IHP ? GO:0005216 ... O75762 N/A
    263 7or1:D (2.64) BS01 IHP ? GO:0005216 ... O75762 N/A
    264 7pe7:A (3.41) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    265 7pe7:B (3.41) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    266 7pe8:A (3.2) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    267 7pe9:A (3.7) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    268 7pea:A (4.07) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    269 7pea:B (4.07) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    270 7peb:A (3.67) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    271 7pec:A (4.24) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 34519268
    272 7pw4:A (3.27) BS01 IHP 2.7.11.1 GO:0000184 ... Q96Q15 34698635
    273 7pw5:A (3.4) BS01 IHP 2.7.11.1 GO:0000184 ... Q96Q15 34698635
    274 7pw6:A (3.05) BS01 IHP 2.7.11.1 GO:0000184 ... Q96Q15 34698635
    275 7pw7:A (3.59) BS01 IHP 2.7.11.1 GO:0000184 ... Q96Q15 34698635
    276 7pw8:A (2.82) BS01 IHP 2.7.11.1 GO:0000184 ... Q96Q15 34698635
    277 7pw9:A (3.12) BS02 IHP 2.7.11.1 GO:0000184 ... Q96Q15 34698635
    278 7qtt:a (3.1) BS05 IHP ? GO:0000244 ... Q6P2Q9 37165190
    279 7sdb:A (2.0) BS01 IHP 3.1.3.48 GO:0004725 ... Q5ZRR1 N/A
    280 7sgl:B (3.0) BS02 IHP 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 34936881
    281 7sgl:C (3.0) BS02 IHP 3.6.4.- GO:0000723 ... P13010 34936881
    282 7sn8:D (2.74) BS01 IHP ? GO:0003674 ... Q9W3E1 36180473
    283 7sn8:I (2.74) BS01 IHP ? GO:0005515 ... Q95TS5 36180473
    284 7sol:A (2.25001) BS01 IHP 6.2.1.45 GO:0004792 ... A0AVT1 35986001
    285 7su3:B (3.3) BS04 IHP 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 34936881
    286 7su3:C (3.3) BS04 IHP 3.6.4.- GO:0000723 ... P13010 34936881
    287 7tn8:A (2.6) BS01 IHP 2.7.1.134
    2.7.1.159
    2.7.4.21    		 GO:0000287 ... Q84Y01 35635723
    288 7urn:A (3.43) BS01 IHP ? GO:0016032 ... P12493 36759579
    289 7urn:A (3.43) BS02 IHP ? GO:0016032 ... P12493 36759579
    290 7uxc:A (3.2) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 36697823
    291 7uxh:A (3.2) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 36697823
    292 7uxh:C (3.2) BS01 IHP 2.7.11.1 GO:0000139 ... P42345 36697823
    293 7vcf:A (2.5) BS01 IHP ? GO:0009507 ... P36495 36413996
    294 7vcf:F (2.5) BS02 IHP ? GO:0000166 ... A0A2K3CR90 36413996
    295 7w59:A (3.6) BS06 IHP ? GO:0000244 ... Q6P2Q9 35705093
    296 7w5a:A (3.6) BS06 IHP ? GO:0000244 ... Q6P2Q9 35705093
    297 7w5b:A (4.3) BS06 IHP ? GO:0000244 ... Q6P2Q9 35705093
    298 7xzi:9 (2.77) BS01 IHP ? GO:0000166 ... A0A2K3CR90 36702157
    299 7xzi:A (2.77) BS01 IHP ? GO:0009507 ... P36495 36702157
    300 7xzj:9 (2.97) BS02 IHP ? GO:0000166 ... A0A2K3CR90 36702157
    301 7xzj:A (2.97) BS01 IHP ? GO:0009507 ... P36495 36702157
    302 7ytj:D (3.0) BS01 IHP 2.7.4.1 GO:0000329 ... P47075 36759618
    303 7ytj:D (3.0) BS02 IHP 2.7.4.1 GO:0000329 ... P47075 36759618
    304 7ytj:D (3.0) BS03 IHP 2.7.4.1 GO:0000329 ... P47075 36759618
    305 7ytj:E (3.0) BS01 IHP ? GO:0000329 ... Q02725 36759618
    306 7z6o:A (3.7) BS03 IHP 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 37870477
    307 7z6o:B (3.7) BS03 IHP 3.6.4.- GO:0000723 ... P13010 37870477
    308 7zt6:B (3.5) BS01 IHP 3.6.4.- GO:0000723 ... P13010 37870477
    309 7zvt:A (2.74) BS02 IHP 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 37870477
    310 7zvt:B (2.74) BS03 IHP 3.6.4.- GO:0000723 ... P13010 37870477
    311 8c6j:A (2.8) BS06 IHP ? GO:0000244 ... Q6P2Q9 36867703
    312 8c6j:h (2.8) BS02 IHP ? GO:0000375 ... O95391 36867703
    313 8ch6:a (5.9) BS05 IHP ? GO:0000244 ... Q6P2Q9 37165190
    314 8cvs:c (3.1) BS01 IHP ? GO:0000502 ... Q14997 35858375
    315 8cvs:c (3.1) BS02 IHP ? GO:0000502 ... Q14997 35858375
    316 8e0f:A (2.7) BS03 IHP 3.5.4.37 GO:0003723 ... P78563 36243986
    317 8e0f:B (2.7) BS03 IHP 3.5.4.37 GO:0003723 ... P78563 36243986
    318 8e1s:A (1.72) BS02 IHP 2.7.4.24 GO:0000829 ... O74429 36468882
    319 8e1s:B (1.72) BS01 IHP 2.7.4.24 GO:0000829 ... O74429 36468882
    320 8e1v:A (1.9) BS03 IHP 2.7.4.24 GO:0000829 ... O74429 36468882
    321 8e4x:A (2.8) BS03 IHP 3.5.4.37 GO:0003723 ... P78563 36243986
    322 8e4x:B (2.8) BS03 IHP 3.5.4.37 GO:0003723 ... P78563 36243986
    323 8eep:A (2.2) BS01 IHP ? GO:0016032 ... P12493 36759579
    324 8fik:A (1.912) BS03 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    325 8fil:A (2.01) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    326 8fil:B (2.01) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    327 8fim:A (2.22) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    328 8fim:B (2.22) BS02 IHP 3.5.4.38 GO:0000932 ... P31941 37821454
    329 8h6e:5B (3.2) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    330 8h6j:5B (3.25) BS03 IHP ? GO:0000244 ... Q6P2Q9 38658629
    331 8h6k:5B (2.7) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    332 8h6l:5B (2.6) BS05 IHP ? GO:0000244 ... Q6P2Q9 38658629
    333 8i0r:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    334 8i0s:A (4.2) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    335 8i0t:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    336 8i0u:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    337 8i0v:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    338 8i0w:A (3.4) BS07 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    339 8qoz:A (3.1) BS06 IHP ? GO:0000244 ... Q6P2Q9 38778104
    340 8qp8:A (3.5) BS04 IHP ? GO:0000244 ... Q6P2Q9 38778104
    341 8qpa:A (3.7) BS06 IHP ? GO:0000244 ... Q6P2Q9 38778104
    342 8qpb:A (3.7) BS05 IHP ? GO:0000244 ... Q6P2Q9 38778104
    343 8qpe:A (3.1) BS05 IHP ? GO:0000244 ... Q6P2Q9 38778104
    344 8ro0:A (2.9) BS05 IHP N/A N/A P34369 38925148
    345 8ro0:J (2.9) BS02 IHP N/A N/A O16376 38925148
    346 8ro1:A (3.0) BS05 IHP N/A N/A P34369 38925148
    347 8ro1:J (3.0) BS02 IHP N/A N/A O16376 38925148
    348 8ro2:A (3.5) BS05 IHP N/A N/A Q6P2Q9 38925148
    349 8t91:A (2.56) BS02 IHP ? GO:0000828 ... A0A3G4ZNY6 38216735
    350 8x5f:A (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    351 8x5f:B (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    352 8xuo:A (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    353 8xuo:G (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    354 8xuq:A (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    355 8xuq:E (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    356 8xuq:F (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    357 8xuq:G (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    358 8xuv:A (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    359 8xuv:B (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    360 8xuv:C (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    361 8xuv:D (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    362 8xuv:E (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    363 8xuv:F (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    364 8xuv:G (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    365 8xuv:H (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    366 8xuv:I (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    367 8xuv:J (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    368 8xuv:K (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    369 8xuv:L (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    370 8xvg:L (9.4) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    371 8xvv:L (3.2) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    372 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    373 8yja:A (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    374 8yja:B (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    375 8yjc:A (1.3) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    376 9bja:A (2.1) BS01 IHP N/A N/A P18177 N/A
    377 9bja:B (2.1) BS01 IHP N/A N/A P18177 N/A
    378 9f1b:DB (3.01) BS02 IHP N/A N/A Q9BXJ9 39169182
    379 9f1c:DB (3.78) BS02 IHP N/A N/A Q9BXJ9 39169182
    380 9f1d:DB (3.26) BS02 IHP N/A N/A Q9BXJ9 39169182
    381 9f44:A (3.68) BS01 IHP N/A N/A P42345 39141345
    382 9f44:B (3.68) BS01 IHP N/A N/A P42345 39141345
    383 9f45:A (3.74) BS01 IHP N/A N/A P42345 39141345
    384 9f45:B (3.74) BS01 IHP N/A N/A P42345 39141345
    385 9fmd:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    386 9fmd:U (3.3) BS01 IHP N/A GO:0000375 ... O95391 38925148
    387 9fpz:B (2.69) BS02 IHP N/A GO:0001525 ... Q9BXJ9 N/A
    388 9fq0:B (4.67) BS02 IHP N/A GO:0005737 ... A0A0B4J1W3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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