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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ez1:A (2.4) BS01 ICB 5.2.1.8 GO:0003755 ... P56112 26850168
    2 5ez1:B (2.4) BS01 ICB 5.2.1.8 GO:0003755 ... P56112 26850168
    3 6htk:A (2.0) BS04 ICB ? GO:0046872 ... C6FX51 30418774
    4 6htk:B (2.0) BS04 ICB ? GO:0046872 ... C6FX51 30418774
    5 6q62:A (1.5) BS02 ICB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    6 6q62:B (1.5) BS01 ICB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    7 6q62:C (1.5) BS01 ICB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    8 6q62:C (1.5) BS03 ICB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    9 6q62:D (1.5) BS01 ICB 2.5.1.15 GO:0004156 ... D2UDM3 N/A
    10 6tie:AAA (1.06) BS03 ICB 4.1.1.102 GO:0005737 ... A0A3F3RNU4 32719558
    11 6tie:AAA (1.06) BS04 ICB 4.1.1.102 GO:0005737 ... A0A3F3RNU4 32719558
    12 6tij:AAA (1.12) BS03 ICB 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    13 6tij:AAA (1.12) BS04 ICB 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    14 6tin:AAA (1.28) BS03 ICB 4.1.1.102 GO:0005737 ... A2QHE5 32719558
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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