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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3t9f:A (2.0) BS02 I8P 2.7.4.24 GO:0000829 ... O43314 22119861
    2 4q4c:A (1.9) BS02 I8P 2.7.4.24 GO:0000829 ... O43314 25044992
    3 7mp2:A (3.0) BS01 I8P ? GO:0001664 ... P08168 34678158
    4 7mp2:B (3.0) BS01 I8P ? GO:0001664 ... P08168 34678158
    5 7mp2:B (3.0) BS02 I8P ? GO:0001664 ... P08168 34678158
    6 7mp2:C (3.0) BS01 I8P ? GO:0001664 ... P08168 34678158
    7 7mp2:C (3.0) BS02 I8P ? GO:0001664 ... P08168 34678158
    8 7mp2:D (3.0) BS01 I8P ? GO:0001664 ... P08168 34678158
    9 7mp2:D (3.0) BS02 I8P ? GO:0001664 ... P08168 34678158
    10 8e1j:A (1.6) BS01 I8P 2.7.4.24 GO:0000829 ... O74429 36468882
    11 8e1j:B (1.6) BS01 I8P 2.7.4.24 GO:0000829 ... O74429 36468882
    12 8tyv:A (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    13 8tyv:B (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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