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BioLiP
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3e3d:A (1.55) BS01 I3C 3.2.1.17 GO:0003796 ... P00698 19020357
    2 3e3s:A (1.73) BS01 I3C ? GO:0005576 ... P02883 19020357
    3 3e3s:A (1.73) BS02 I3C ? GO:0005576 ... P02883 19020357
    4 3e3s:A (1.73) BS03 I3C ? GO:0005576 ... P02883 19020357
    5 3e3t:A (1.6) BS01 I3C 3.4.21.36 GO:0004252 ... P00772 19020357
    6 3e3t:A (1.6) BS02 I3C 3.4.21.36 GO:0004252 ... P00772 19020357
    7 3e3t:A (1.6) BS03 I3C 3.4.21.36 GO:0004252 ... P00772 19020357
    8 3e3t:A (1.6) BS04 I3C 3.4.21.36 GO:0004252 ... P00772 19020357
    9 3e79:A (1.9) BS01 I3C ? N/A P15363 19020356
    10 3e79:A (1.9) BS02 I3C ? N/A P15363 19020356
    11 3gt4:A (1.76) BS01 I3C 3.4.21.64 GO:0004252 ... P06873 20382990
    12 3gt4:A (1.76) BS02 I3C 3.4.21.64 GO:0004252 ... P06873 20382990
    13 3gt4:A (1.76) BS03 I3C 3.4.21.64 GO:0004252 ... P06873 20382990
    14 3q7s:B (2.1) BS01 I3C ? GO:0000160 ... A0A0H3MDW1 21775428
    15 3q7s:B (2.1) BS02 I3C ? GO:0000160 ... A0A0H3MDW1 21775428
    16 4arr:A (3.0) BS01 I3C ? N/A P08953
    Q4G1L2    		 23596340
    17 4arr:B (3.0) BS01 I3C ? N/A P08953
    Q4G1L2    		 23596340
    18 4b9h:A (2.1) BS01 I3C ? N/A B3VBK9 23840930
    19 4bvx:A (1.6) BS01 I3C 6.1.1.10 N/A P56192 26472928
    20 4bvx:A (1.6) BS02 I3C 6.1.1.10 N/A P56192 26472928
    21 4bvx:B (1.6) BS01 I3C ? GO:0005515 ... O43324 26472928
    22 4bvx:B (1.6) BS02 I3C ? GO:0005515 ... O43324 26472928
    23 4n6d:A (1.701) BS01 I3C ? GO:0055085 ... C6C297 25540822
    24 4n6d:A (1.701) BS02 I3C ? GO:0055085 ... C6C297 25540822
    25 4nc7:A (2.0) BS01 I3C ? GO:0006351 ... P12464 24937760
    26 5e9o:B (2.1) BS01 I3C 3.2.1.4 N/A E0RQU0 26868291
    27 5e9o:C (2.1) BS01 I3C 3.2.1.4 N/A E0RQU0 26868291
    28 5e9o:C (2.1) BS02 I3C 3.2.1.4 N/A E0RQU0 26868291
    29 5e9o:D (2.1) BS01 I3C 3.2.1.4 N/A E0RQU0 26868291
    30 5e9o:D (2.1) BS02 I3C 3.2.1.4 N/A E0RQU0 26868291
    31 5for:A (2.5) BS01 I3C ? GO:0007165 ... Q6ZUJ8 27909057
    32 5l1a:A (2.4) BS01 I3C ? N/A Q5ZT91 N/A
    33 5l1a:A (2.4) BS02 I3C ? N/A Q5ZT91 N/A
    34 5l1a:A (2.4) BS03 I3C ? N/A Q5ZT91 N/A
    35 5l1a:A (2.4) BS04 I3C ? N/A Q5ZT91 N/A
    36 5u84:A (2.34) BS01 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    37 5u84:A (2.34) BS02 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    38 5u84:A (2.34) BS03 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    39 5u84:A (2.34) BS04 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    40 5u84:A (2.34) BS05 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    41 5u84:A (2.34) BS06 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    42 5u84:B (2.34) BS01 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    43 5u84:B (2.34) BS02 I3C 3.5.1.-
    3.5.1.23    		 GO:0005576 ... A0A383ZFX3 29692406
    44 6eg7:A (3.0) BS01 I3C ? GO:0004519 ... Q5D6Y4 30395313
    45 6eg7:A (3.0) BS02 I3C ? GO:0004519 ... Q5D6Y4 30395313
    46 6eg7:A (3.0) BS03 I3C ? GO:0004519 ... Q5D6Y4 30395313
    47 6eg7:B (3.0) BS01 I3C ? GO:0004519 ... Q5D6Y4 30395313
    48 6eg7:B (3.0) BS02 I3C ? GO:0004519 ... Q5D6Y4 30395313
    49 6eg7:B (3.0) BS03 I3C ? GO:0004519 ... Q5D6Y4 30395313
    50 6jze:A (2.51) BS01 I3C 3.4.17.17 GO:0005737 ... Q8C5G2 31324789
    51 6jze:A (2.51) BS02 I3C 3.4.17.17 GO:0005737 ... Q8C5G2 31324789
    52 6jze:A (2.51) BS03 I3C 3.4.17.17 GO:0005737 ... Q8C5G2 31324789
    53 6jze:B (2.51) BS01 I3C ? GO:0005515 ... Q8N300 31324789
    54 6jze:B (2.51) BS02 I3C ? GO:0005515 ... Q8N300 31324789
    55 6lcm:C (2.5) BS01 I3C ? GO:0008821 ... B4FCI7 32184398
    56 6lcm:C (2.5) BS02 I3C ? GO:0008821 ... B4FCI7 32184398
    57 6lcm:C (2.5) BS03 I3C ? GO:0008821 ... B4FCI7 32184398
    58 6mry:F (2.3) BS01 I3C ? GO:0006952 ... A0A4V8H030 30794440
    59 6mry:G (2.3) BS01 I3C ? GO:0006952 ... A0A4V8H030 30794440
    60 6mry:H (2.3) BS01 I3C ? GO:0006952 ... A0A4V8H030 30794440
    61 6mry:I (2.3) BS01 I3C ? GO:0006952 ... A0A4V8H030 30794440
    62 6mry:I (2.3) BS02 I3C ? GO:0006952 ... A0A4V8H030 30794440
    63 6mry:J (2.3) BS01 I3C ? GO:0006952 ... A0A4V8H030 30794440
    64 6mry:K (2.3) BS01 I3C ? GO:0006952 ... A0A4V8H030 30794440
    65 6nqz:A (2.58) BS01 I3C ? N/A Q72RA0 N/A
    66 6o43:A (2.08223) BS01 I3C ? N/A Q859J2 31282476
    67 6pbb:A (1.89151) BS01 I3C 3.2.1.17 GO:0003796 ... P00698 31282476
    68 6qe4:A (2.3) BS01 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    69 6qe4:A (2.3) BS02 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    70 6qe4:A (2.3) BS03 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    71 6qe4:A (2.3) BS04 I3C 2.1.-.- GO:0003723 ... Q5T440 30950402
    72 6x42:X (1.2) BS03 I3C 3.4.22.- GO:0006508 ... Q9TY95 32955133
    73 6z79:A (1.92) BS01 I3C ? N/A A0A291L8F4 33462435
    74 7jsy:A (1.78) BS01 I3C 3.4.21.64 GO:0004252 ... P06873 33007196
    75 7jsy:A (1.78) BS02 I3C 3.4.21.64 GO:0004252 ... P06873 33007196
    76 7jsy:A (1.78) BS03 I3C 3.4.21.64 GO:0004252 ... P06873 33007196
    77 7skx:C (1.5) BS01 I3C 3.4.21.64 GO:0004252 ... P06873 35637302
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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