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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ekt:A (3.02) BS03 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    2 7ekt:A (3.02) BS05 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    3 7ekt:B (3.02) BS02 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    4 7ekt:B (3.02) BS05 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    5 7ekt:C (3.02) BS02 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    6 7ekt:C (3.02) BS05 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    7 7ekt:D (3.02) BS02 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    8 7ekt:D (3.02) BS05 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    9 7ekt:E (3.02) BS02 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    10 7ekt:E (3.02) BS04 I34 ? GO:0004888 ... P36544 33958730 BindingDB: EC50=3800nM
    11 8v82:A (2.61) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    12 8v82:A (2.61) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    13 8v82:B (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    14 8v82:B (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    15 8v82:C (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    16 8v82:C (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    17 8v82:D (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    18 8v82:D (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    19 8v82:E (2.61) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    20 8v82:E (2.61) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    21 8v8a:A (2.19) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    22 8v8a:A (2.19) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    23 8v8a:B (2.19) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    24 8v8a:B (2.19) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    25 8v8a:C (2.19) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    26 8v8a:C (2.19) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    27 8v8a:D (2.19) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    28 8v8a:D (2.19) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    29 8v8a:E (2.19) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    30 8v8a:E (2.19) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    31 8v8c:A (3.29) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    32 8v8c:A (3.29) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    33 8v8c:B (3.29) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    34 8v8c:B (3.29) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    35 8v8c:C (3.29) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    36 8v8c:C (3.29) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    37 8v8c:D (3.29) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    38 8v8c:D (3.29) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    39 8v8c:E (3.29) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    40 8v8c:E (3.29) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    41 8v8d:A (3.31) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    42 8v8d:A (3.31) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43 8v8d:B (3.31) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    44 8v8d:B (3.31) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    45 8v8d:C (3.31) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    46 8v8d:C (3.31) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    47 8v8d:D (3.31) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    48 8v8d:D (3.31) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    49 8v8d:E (3.31) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    50 8v8d:E (3.31) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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