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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ahr:A (1.9) BS01 I2E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 23139382 PDBbind: -logKd/Ki=2.19, Kd=6.5mM
    2 4ahr:A (1.9) BS02 I2E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 23139382 PDBbind: -logKd/Ki=2.19, Kd=6.5mM
    3 4ahr:B (1.9) BS01 I2E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 23139382 PDBbind: -logKd/Ki=2.19, Kd=6.5mM
    4 4ahr:B (1.9) BS02 I2E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 23139382 PDBbind: -logKd/Ki=2.19, Kd=6.5mM
    5 4ef6:A (1.94) BS01 I2E 6.3.2.1 GO:0000287 ... P9WIL5 23872845 MOAD: Kd=1.18mM
    PDBbind: -logKd/Ki=2.92, Kd=1.2mM
    6 4ef6:B (1.94) BS01 I2E 6.3.2.1 GO:0000287 ... P9WIL5 23872845 MOAD: Kd=1.18mM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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