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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3tyk:A (1.95) BS01 HY0 2.7.1.163 GO:0005524 ... P00557 21084294
    2 3w0n:A (1.9) BS02 HY0 2.7.1.163 GO:0005524 ... P00557 23747390
    3 3w0o:A (1.5) BS02 HY0 2.7.1.163 GO:0005524 ... P00557 23747390
    4 3w0p:A (2.0) BS02 HY0 2.7.1.163 GO:0005524 ... P00557 23747390
    5 3w0q:A (1.8) BS02 HY0 2.7.1.163 GO:0005524 ... P00557 23747390
    6 3w0r:A (2.3) BS02 HY0 2.7.1.163 GO:0005524 ... P00557 23747390
    7 3w0s:A (1.77) BS01 HY0 2.7.1.163 GO:0005524 ... P00557 23747390
    8 4xcb:A (1.6) BS02 HY0 ? GO:0016491 ... Q2MFS1 26240321 PDBbind: -logKd/Ki=5.47, Kd=3.4uM
    9 4xcb:B (1.6) BS02 HY0 ? GO:0016491 ... Q2MFS1 26240321
    10 4xcb:C (1.6) BS02 HY0 ? GO:0016491 ... Q2MFS1 26240321
    11 4xcb:D (1.6) BS02 HY0 ? GO:0016491 ... Q2MFS1 26240321
    12 6iy9:A (2.4) BS01 HY0 2.7.1.119 GO:0005524 ... P09979 31475927
    13 6iy9:B (2.4) BS01 HY0 2.7.1.119 GO:0005524 ... P09979 31475927
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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