Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1chw:A (1.9) BS01 HXC 2.3.1.74 GO:0009058 ... P30074 10426957
    2 1chw:B (1.9) BS01 HXC 2.3.1.74 GO:0009058 ... P30074 10426957
    3 1mj3:A (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    4 1mj3:B (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    5 1mj3:B (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    6 1mj3:C (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    7 1mj3:C (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    8 1mj3:E (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    9 1mj3:F (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    10 1mj3:F (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    11 1w6u:A (1.75) BS02 HXC 1.3.1.124 GO:0005634 ... Q16698 15531764
    12 1w6u:B (1.75) BS02 HXC 1.3.1.124 GO:0005634 ... Q16698 15531764
    13 1w6u:C (1.75) BS02 HXC 1.3.1.124 GO:0005634 ... Q16698 15531764
    14 1w6u:D (1.75) BS02 HXC 1.3.1.124 GO:0005634 ... Q16698 15531764
    15 1wn3:A (2.1) BS01 HXC ? GO:0016289 ... Q5SJP3 16061252
    16 1wn3:B (2.1) BS01 HXC ? GO:0016289 ... Q5SJP3 16061252
    17 1wn3:C (2.1) BS01 HXC ? GO:0016289 ... Q5SJP3 16061252
    18 1wn3:C (2.1) BS02 HXC ? GO:0016289 ... Q5SJP3 16061252
    19 1wn3:D (2.1) BS01 HXC ? GO:0016289 ... Q5SJP3 16061252
    20 1wn3:D (2.1) BS02 HXC ? GO:0016289 ... Q5SJP3 16061252
    21 1wn3:E (2.1) BS02 HXC ? GO:0016289 ... Q5SJP3 16061252
    22 1wn3:F (2.1) BS01 HXC ? GO:0016289 ... Q5SJP3 16061252
    23 1wn3:G (2.1) BS01 HXC ? GO:0016289 ... Q5SJP3 16061252
    24 1wn3:G (2.1) BS02 HXC ? GO:0016289 ... Q5SJP3 16061252
    25 1wn3:H (2.1) BS01 HXC ? GO:0016289 ... Q5SJP3 16061252
    26 1wn3:H (2.1) BS02 HXC ? GO:0016289 ... Q5SJP3 16061252
    27 3v1u:A (2.5) BS02 HXC 1.1.1.100 GO:0000166 ... O53665 23163771
    28 4fc6:A (2.1) BS02 HXC 1.3.1.124 GO:0005515 ... Q9NUI1 22745130
    29 4fc6:B (2.1) BS02 HXC 1.3.1.124 GO:0005515 ... Q9NUI1 22745130
    30 4fc6:C (2.1) BS01 HXC 1.3.1.124 GO:0005515 ... Q9NUI1 22745130
    31 4fc6:D (2.1) BS02 HXC 1.3.1.124 GO:0005515 ... Q9NUI1 22745130
    32 4rpm:A (1.4) BS02 HXC ? GO:0016740 ... Q2GWK9 26172141
    33 5inf:B (2.751) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    34 5inf:F (2.751) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    35 5ini:A (2.85) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    36 5ini:B (2.85) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    37 5ini:B (2.85) BS02 HXC ? GO:0003989 ... A0ACI9 28000660
    38 5ini:C (2.85) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    39 5ini:D (2.85) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    40 5ini:E (2.85) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    41 5ini:F (2.85) BS01 HXC ? GO:0003989 ... A0ACI9 28000660
    42 5ini:F (2.85) BS02 HXC ? GO:0003989 ... A0ACI9 28000660
    43 5t06:A (1.898) BS01 HXC 3.1.2.- GO:0005515 ... P0A8Z3 N/A
    44 5t06:C (1.898) BS01 HXC 3.1.2.- GO:0005515 ... P0A8Z3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218