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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fdq:A (2.1) BS01 HXA ? GO:0005504 ... O15540 10854433 MOAD: Kd=53.4nM
    PDBbind: -logKd/Ki=7.27, Kd=53.4nM
    2 1fdq:B (2.1) BS01 HXA ? GO:0005504 ... O15540 10854433 MOAD: Kd=53.4nM
    3 1mv9:A (1.9) BS02 HXA ? GO:0003677 ... P19793 11981034
    4 2byo:A (2.15) BS04 HXA ? GO:0005319 ... P9WK65 16541102
    5 2g7z:A (2.05) BS03 HXA ? GO:0008289 ... P67372 N/A
    6 2g7z:B (2.05) BS02 HXA ? GO:0008289 ... P67372 N/A
    7 2vv0:A (2.55) BS01 HXA ? GO:0003677 ... P37231 19172745
    8 2vv0:B (2.55) BS01 HXA ? GO:0003677 ... P37231 19172745
    9 3hs7:A (2.65) BS02 HXA 1.14.99.1 GO:0001516 ... Q05769 20463020
    10 3hs7:B (2.65) BS02 HXA 1.14.99.1 GO:0001516 ... Q05769 20463020
    11 5y5c:A (2.61) BS01 HXA ? GO:0005515 ... P02754 N/A
    12 5y5c:A (2.61) BS02 HXA ? GO:0005515 ... P02754 N/A
    13 5y5c:B (2.61) BS01 HXA ? GO:0005515 ... P02754 N/A
    14 7wkb:A (0.81) BS01 HXA ? GO:0005515 ... P05413 N/A
    15 8eit:R (2.8) BS01 HXA 3.2.1.17 GO:0003796 ... O14842
    P00720    		 37216523
    16 8h0d:A (2.01) BS01 HXA ? GO:0006629 ... A0A7Y4B3E8 37558668
    17 8h4i:R (3.06) BS01 HXA ? GO:0001818 ... Q5NUL3 37286793
    18 8h4l:R (3.07) BS01 HXA ? GO:0001818 ... Q5NUL3 37286793
    19 8t3q:R (3.14) BS01 HXA ? GO:0004930 ... Q5NUL3 38198545
    20 8t3v:R (3.39) BS01 HXA ? GO:0004930 ... O14842 38198545
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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