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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kf6:B (2.7) BS04 HQO 1.3.5.1 GO:0005515 ... P0AC47 11850430 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    2 1kf6:C (2.7) BS01 HQO ? GO:0000104 ... P0A8Q0 11850430 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    3 1kf6:D (2.7) BS01 HQO ? GO:0000104 ... P0A8Q3 11850430 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    4 1kf6:N (2.7) BS04 HQO 1.3.5.1 GO:0005515 ... P0AC47 11850430
    5 1kf6:O (2.7) BS01 HQO ? GO:0000104 ... P0A8Q0 11850430
    6 1kf6:P (2.7) BS01 HQO ? GO:0000104 ... P0A8Q3 11850430
    7 1kqg:C (2.8) BS03 HQO 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    8 2vr0:C (2.8) BS05 HQO 1.10.2.- GO:0005886 ... Q72EF4 18597779 PDBbind: -logKd/Ki=4.42, Ki=38uM
    9 2vr0:F (2.8) BS06 HQO 1.10.2.- GO:0005886 ... Q72EF4 18597779
    10 3ayg:A (2.7) BS07 HQO ? GO:0004129 ... B3Y963 22266822
    11 6bdo:B (2.8) BS02 HQO ? GO:0000166 ... F5L3B8 29621505
    12 6bdo:C (2.8) BS02 HQO ? GO:0000166 ... F5L3B8 29621505
    13 6koe:A (3.75) BS04 HQO 1.10.3.- GO:0004129 ... P34956 31888984
    14 6koe:E (3.75) BS04 HQO 1.10.3.- GO:0004129 ... P34956 31888984
    15 7t5k:A (2.25) BS02 HQO 1.3.5.2 GO:0004152 ... P0A7E1 35441142
    16 7t5k:B (2.25) BS01 HQO 1.3.5.2 GO:0004152 ... P0A7E1 35441142
    17 8a1y:B (3.3) BS03 HQO 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    18 8x2j:C (2.7) BS03 HQO ? GO:0005886 ... A9WEV4 38299372
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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