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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e7b:A (2.38) BS01 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    2 1e7b:A (2.38) BS02 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    3 1e7b:B (2.38) BS01 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    4 1e7b:B (2.38) BS02 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    5 1e7b:B (2.38) BS03 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    6 1e7c:A (2.4) BS01 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    7 1e7c:A (2.4) BS02 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    8 1e7c:A (2.4) BS03 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    9 1e7c:A (2.4) BS04 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    10 1e7c:A (2.4) BS05 HLT ? GO:0003677 ... P02768 10940303 BindingDB: IC50=2900000nM
    11 1xz1:A (1.75) BS01 HLT ? GO:0005506 ... P02791 15791007 MOAD: Ka~100000M^-1
    12 2jst:B (-1.00) BS01 HLT N/A N/A N/A 18310239 PDBbind: -logKd/Ki=2.59, Kd=2.6mM
    13 2kug:A (-1.00) BS03 HLT ? GO:0000086 ... P0DP23 N/A
    14 2kuh:A (-1.00) BS03 HLT ? GO:0005509 ... P0DP23 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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