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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bv3:A (1.85) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 10550681
    2 1f2w:A (1.9) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 11015219
    3 1ze8:A (2.0) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 16134940
    4 2aw1:A (1.46) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 16290146
    5 2f14:A (1.71) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 16787097
    6 3ibi:A (1.93) BS03 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19731956
    7 3ibl:A (1.55) BS03 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19731956
    8 3ibn:A (2.2) BS03 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19731956
    9 3ibu:A (1.41) BS03 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19731956
    10 3k34:A (0.9) BS01 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20445237
    11 3v5g:A (1.5) BS05 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 22775345
    12 4mty:A (1.0) BS04 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 24288253
    13 4qy3:A (1.5) BS03 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25407638
    14 4xe1:A (1.8) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25733161
    15 5byi:A (1.15) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 26199669
    16 5fdc:A (1.75) BS03 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27151329
    17 5fdi:A (1.85) BS03 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27151329
    18 5jqt:A (1.36) BS05 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27722534
    19 5t71:A (1.3) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29357237
    20 5t72:A (1.3) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29357237
    21 5t74:A (1.2) BS02 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29357237
    22 7v39:A (2.2) BS02 HGB 3.1.13.- N/A P13699 34977900
    23 7v39:B (2.2) BS02 HGB 3.1.13.- N/A P13699 34977900
    24 7v3c:B (1.9) BS02 HGB 3.1.13.- N/A P13699 34977900
    25 8ogd:A (1.75) BS01 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 37068394
    26 8oge:A (1.46) BS01 HGB 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 37068394
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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