Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 61 62 63 64 65 66 67 68 69 70 71 72 73 74 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14001 8j4q:C (2.1) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    14002 8j4q:D (2.1) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    14003 8j4r:A (2.5) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    14004 8j4r:B (2.5) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    14005 8j4r:C (2.5) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    14006 8j4r:D (2.5) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    14007 8j5k:E (2.93) BS01 HEM ? GO:0009523 ... A0A679C209 38071196
    14008 8j5k:F (2.93) BS01 HEM ? GO:0009523 ... A0T0U1 38071196
    14009 8j5k:V (2.93) BS01 HEM ? GO:0005506 ... A0A8F5GGT9 38071196
    14010 8j5k:e (2.93) BS01 HEM ? GO:0009523 ... A0A679C209 38071196
    14011 8j5k:f (2.93) BS01 HEM ? GO:0009523 ... A0T0U1 38071196
    14012 8j5k:v (2.93) BS01 HEM ? GO:0005506 ... A0A8F5GGT9 38071196
    14013 8j5o:C (2.9) BS03 HEM ? GO:0005506 ... A7NQE7 37737710
    14014 8j5o:C (2.9) BS04 HEM ? GO:0005506 ... A7NQE7 37737710
    14015 8j5o:C (2.9) BS05 HEM ? GO:0005506 ... A7NQE7 37737710
    14016 8j5o:C (2.9) BS06 HEM ? GO:0005506 ... A7NQE7 37737710
    14017 8j5p:C (3.1) BS03 HEM ? GO:0005506 ... A7NQE7 37737710
    14018 8j5p:C (3.1) BS04 HEM ? GO:0005506 ... A7NQE7 37737710
    14019 8j5p:C (3.1) BS05 HEM ? GO:0005506 ... A7NQE7 37737710
    14020 8j5p:C (3.1) BS06 HEM ? GO:0005506 ... A7NQE7 37737710
    14021 8jax:A (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14022 8jax:B (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14023 8jax:C (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14024 8jax:D (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14025 8jax:E (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14026 8jax:F (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14027 8jax:G (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14028 8jax:H (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14029 8jax:I (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14030 8jax:J (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14031 8jax:K (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14032 8jax:L (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14033 8jax:M (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14034 8jax:N (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14035 8jax:O (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14036 8jax:P (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14037 8jax:Q (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14038 8jax:R (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14039 8jax:S (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14040 8jax:T (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14041 8jax:U (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14042 8jax:V (3.27) BS02 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14043 8jax:W (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14044 8jax:X (3.27) BS01 HEM 1.16.3.1 GO:0004322 ... Q9S2N0 37529551
    14045 8jc3:A (1.82) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    14046 8jc3:B (1.82) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    14047 8jc4:A (2.64) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    14048 8jc4:B (2.64) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    14049 8jnc:A (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14050 8jnc:B (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14051 8jno:A (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14052 8jno:B (2.0) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14053 8jnp:A (2.0) BS02 HEM N/A GO:0004497 ... N/A 37917570
    14054 8jnq:A (2.0) BS02 HEM N/A GO:0004497 ... N/A 37917570
    14055 8joo:A (2.25) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14056 8joo:B (2.25) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14057 8jrl:A (2.07) BS01 HEM ? GO:0004497 ... A0A077KEB8 N/A
    14058 8js5:A (2.95) BS01 HEM N/A N/A P23222 N/A
    14059 8js5:B (2.95) BS01 HEM N/A N/A P23222 N/A
    14060 8js5:C (2.95) BS01 HEM N/A N/A P23222 N/A
    14061 8js5:D (2.95) BS01 HEM N/A N/A P23222 N/A
    14062 8js5:E (2.95) BS01 HEM N/A N/A P23222 N/A
    14063 8js5:F (2.95) BS01 HEM N/A N/A P23222 N/A
    14064 8js5:G (2.95) BS01 HEM N/A N/A P23222 N/A
    14065 8js5:H (2.95) BS01 HEM N/A N/A P23222 N/A
    14066 8js5:I (2.95) BS01 HEM N/A N/A P23222 N/A
    14067 8js5:J (2.95) BS01 HEM N/A N/A P23222 N/A
    14068 8js6:A (2.7) BS01 HEM N/A N/A P23222 N/A
    14069 8js6:B (2.7) BS01 HEM N/A N/A P23222 N/A
    14070 8js6:C (2.7) BS01 HEM N/A N/A P23222 N/A
    14071 8js6:D (2.7) BS01 HEM N/A N/A P23222 N/A
    14072 8js6:E (2.7) BS01 HEM N/A N/A P23222 N/A
    14073 8js6:F (2.7) BS01 HEM N/A N/A P23222 N/A
    14074 8js6:G (2.7) BS01 HEM N/A N/A P23222 N/A
    14075 8js6:H (2.7) BS01 HEM N/A N/A P23222 N/A
    14076 8js6:I (2.7) BS01 HEM N/A N/A P23222 N/A
    14077 8js6:J (2.7) BS01 HEM N/A N/A P23222 N/A
    14078 8js7:A (2.85) BS01 HEM N/A N/A P23222 N/A
    14079 8js7:B (2.85) BS01 HEM N/A N/A P23222 N/A
    14080 8js7:C (2.85) BS01 HEM N/A N/A P23222 N/A
    14081 8js7:D (2.85) BS01 HEM N/A N/A P23222 N/A
    14082 8js7:E (2.85) BS01 HEM N/A N/A P23222 N/A
    14083 8js7:F (2.85) BS01 HEM N/A N/A P23222 N/A
    14084 8js7:G (2.85) BS01 HEM N/A N/A P23222 N/A
    14085 8js7:H (2.85) BS01 HEM N/A N/A P23222 N/A
    14086 8js7:I (2.85) BS01 HEM N/A N/A P23222 N/A
    14087 8js7:J (2.85) BS01 HEM N/A N/A P23222 N/A
    14088 8jua:A (2.00001) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14089 8jua:B (2.00001) BS01 HEM ? GO:0004497 ... A0A0B4ZV78 37917570
    14090 8k5m:A () BS01 HEM N/A N/A N/A N/A
    14091 8k65:A (2.0) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    14092 8k6y:A (2.0) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    14093 8kde:E (2.6) BS01 HEM N/A GO:0005506 ... P48268 38890314
    14094 8kde:F (2.6) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    14095 8kei:B (3.56) BS01 HEM 1.-.-.- GO:0005515 ... P04839 N/A
    14096 8kei:B (3.56) BS02 HEM 1.-.-.- GO:0005515 ... P04839 N/A
    14097 8kei:D (3.56) BS01 HEM ? N/A Q9BQA9 N/A
    14098 8ki1:A (1.9) BS01 HEM ? N/A Q4K5N8 38495978
    14099 8ki1:B (1.9) BS01 HEM ? N/A Q4K5N8 38495978
    14100 8nse:A (2.25) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    14101 8nse:B (2.25) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    14102 8ohy:A (1.95) BS02 HEM ? GO:0004601 ... Q556V8 37593106
    14103 8olh:A (1.23) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    14104 8olh:B (1.23) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    14105 8olp:A (1.27) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    14106 8olp:B (1.27) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    14107 8omc:A (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    14108 8omc:B (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    14109 8oup:A (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    14110 8oup:B (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    14111 8oup:C (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    14112 8oup:D (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    14113 8ovc:H (2.8) BS06 HEM N/A GO:0008121 ... A0R052 38902248
    14114 8ovc:H (2.8) BS09 HEM N/A GO:0008121 ... A0R052 38902248
    14115 8ovc:N (2.8) BS03 HEM N/A GO:0008121 ... A0R052 38902248
    14116 8ovc:N (2.8) BS06 HEM N/A GO:0008121 ... A0R052 38902248
    14117 8ovd:H (2.3) BS07 HEM N/A GO:0008121 ... A0R052 38902248
    14118 8ovd:H (2.3) BS10 HEM N/A GO:0008121 ... A0R052 38902248
    14119 8ovd:N (2.3) BS04 HEM N/A GO:0008121 ... A0R052 38902248
    14120 8ovd:N (2.3) BS07 HEM N/A GO:0008121 ... A0R052 38902248
    14121 8p65:C (3.0) BS01 HEM N/A GO:0005739 ... P00157 N/A
    14122 8p65:C (3.0) BS02 HEM N/A GO:0005739 ... P00157 N/A
    14123 8p65:P (3.0) BS01 HEM N/A GO:0005739 ... P00157 N/A
    14124 8p65:P (3.0) BS02 HEM N/A GO:0005739 ... P00157 N/A
    14125 8pnu:A (2.12) BS02 HEM ? GO:0016020 ... O50216 38744914
    14126 8pnu:A (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    14127 8pnu:B (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    14128 8pnu:B (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    14129 8pnu:C (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    14130 8pnu:C (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    14131 8pnu:G (2.12) BS02 HEM ? GO:0016020 ... O50216 38744914
    14132 8pnu:G (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    14133 8pnu:H (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    14134 8pnu:H (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    14135 8pnu:I (2.12) BS01 HEM ? GO:0016020 ... O50216 38744914
    14136 8pnu:I (2.12) BS03 HEM ? GO:0016020 ... O50216 38744914
    14137 8pnv:A (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    14138 8pnv:A (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    14139 8pnv:B (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    14140 8pnv:B (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    14141 8pnv:C (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    14142 8pnv:C (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    14143 8pnv:G (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    14144 8pnv:G (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    14145 8pnv:H (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    14146 8pnv:H (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    14147 8pnv:I (2.048) BS01 HEM ? GO:0016020 ... O50216 38744914
    14148 8pnv:I (2.048) BS02 HEM ? GO:0016020 ... O50216 38744914
    14149 8puq:A (1.95) BS01 HEM ? GO:0004601 ... P01958 37860963
    14150 8puq:B (1.95) BS01 HEM ? GO:0004601 ... P02062 37860963
    14151 8pur:A (1.85) BS01 HEM ? GO:0004601 ... P01958 37860963
    14152 8pur:B (1.85) BS01 HEM ? GO:0004601 ... P02062 37860963
    14153 8pvd:A (3.4) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 38011573
    14154 8pw5:C (3.6) BS01 HEM ? GO:0001666 ... P00158 38575788
    14155 8pw5:C (3.6) BS02 HEM ? GO:0001666 ... P00158 38575788
    14156 8pw5:N (3.6) BS01 HEM ? GO:0001666 ... P00158 38575788
    14157 8pw5:N (3.6) BS02 HEM ? GO:0001666 ... P00158 38575788
    14158 8pw6:C (3.3) BS01 HEM ? GO:0001666 ... P00158 38575788
    14159 8pw6:C (3.3) BS02 HEM ? GO:0001666 ... P00158 38575788
    14160 8pw6:N (3.3) BS01 HEM ? GO:0001666 ... P00158 38575788
    14161 8pw6:N (3.3) BS02 HEM ? GO:0001666 ... P00158 38575788
    14162 8pw7:C (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    14163 8pw7:C (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    14164 8pw7:N (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    14165 8pw7:N (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    14166 8pws:A (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    14167 8pws:B (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    14168 8pws:C (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    14169 8pws:D (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    14170 8pws:E (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    14171 8pws:F (1.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    14172 8pwy:A (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    14173 8pwy:B (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    14174 8pwy:C (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    14175 8pwy:D (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    14176 8pwy:E (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    14177 8pwy:F (1.8) BS01 HEM N/A N/A A0A7U9HFU5 N/A
    14178 8pxp:A (2.01) BS01 HEM N/A N/A A0A7U9DT46 N/A
    14179 8pxp:B (2.01) BS01 HEM N/A N/A A0A7U9DT46 N/A
    14180 8q1b:C (3.4) BS01 HEM ? GO:0005739 ... P05501 37939086
    14181 8q1b:C (3.4) BS02 HEM ? GO:0005739 ... P05501 37939086
    14182 8q1b:N (3.4) BS01 HEM ? GO:0005739 ... P05501 37939086
    14183 8q1b:N (3.4) BS02 HEM ? GO:0005739 ... P05501 37939086
    14184 8q5j:A (1.48) BS01 HEM ? GO:0004497 ... A0A100JTL7 N/A
    14185 8q6x:A (1.91) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    14186 8q6x:B (1.91) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    14187 8q6y:A (1.81) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    14188 8q6y:B (1.81) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    14189 8q6z:A (1.96) BS01 HEM N/A N/A N/A N/A
    14190 8qba:A (1.39) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    14191 8qbc:A (1.23) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    14192 8qcz:A (3.1) BS01 HEM N/A N/A Q9UPI3 N/A
    14193 8qq7:A (3.62) BS02 HEM ? GO:0016020 ... Q8CZ28 38640072
    14194 8qq7:A (3.62) BS03 HEM ? GO:0016020 ... Q8CZ28 38640072
    14195 8qqk:A (2.8) BS01 HEM 7.1.1.3 GO:0004129 ... P0ABI8 38614453
    14196 8qrd:A (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    14197 8qrd:B (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    14198 8qrd:C (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    14199 8qrd:D (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    14200 8qrd:E (2.3) BS01 HEM N/A GO:0004497 ... Q59819 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218