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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13801 8gz3:B (3.3) BS03 HEM 1.-.-.- GO:0005515 ... P04839 36413210
    13802 8gzu:0F (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    13803 8gzu:50 (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    13804 8gzu:QC (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13805 8gzu:QC (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13806 8gzu:Qc (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13807 8gzu:Qc (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13808 8gzu:Y5 (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    13809 8gzu:qC (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13810 8gzu:qC (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13811 8gzu:qc (4.18) BS01 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13812 8gzu:qc (4.18) BS02 HEM 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    13813 8gzu:y5 (4.18) BS01 HEM ? GO:0005739 ... Q951A7 37248254
    13814 8h17:A (2.15) BS02 HEM ? GO:0019825 ... Q8DHH0 37076076
    13815 8hbe:B (3.2) BS01 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    13816 8hbf:B (3.1) BS02 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    13817 8hbh:B (3.1) BS02 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    13818 8hcr:B (-1.00) BS01 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    13819 8hcr:B (-1.00) BS02 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    13820 8hcr:N (-1.00) BS01 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    13821 8hcr:N (-1.00) BS02 HEM 7.1.1.8 GO:0005886 ... P9WP37 37158740
    13822 8hdd:B (3.0) BS01 HEM ? GO:0005506 ... Q71JE9 36473944
    13823 8hg9:A (2.79) BS01 HEM N/A GO:0004497 ... N/A 36655276
    13824 8hg9:B (2.79) BS01 HEM N/A GO:0004497 ... N/A 36655276
    13825 8hgb:A (1.54) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    13826 8hgc:A (1.72) BS01 HEM ? GO:0004497 ... Q2IU02 36790023
    13827 8hgd:B (1.53) BS01 HEM ? GO:0004497 ... A0A368UNN3 N/A
    13828 8hge:B (1.53) BS01 HEM ? GO:0004497 ... A0A368UNN3 N/A
    13829 8hgt:A (2.06) BS01 HEM ? GO:0004497 ... A0A368UNN3 36790023
    13830 8hid:A (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    13831 8hid:B (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    13832 8hid:C (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    13833 8hid:D (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    13834 8hju:C (2.8) BS04 HEM ? GO:0005506 ... A7NQE7 37737710
    13835 8hju:C (2.8) BS05 HEM ? GO:0005506 ... A7NQE7 37737710
    13836 8hju:C (2.8) BS06 HEM ? GO:0005506 ... A7NQE7 37737710
    13837 8hju:C (2.8) BS07 HEM ? GO:0005506 ... A7NQE7 37737710
    13838 8hju:L (2.8) BS09 HEM ? GO:0009772 ... A7NQE8 37737710
    13839 8hjv:C (3.1) BS01 HEM ? GO:0005506 ... A7NQE7 37737710
    13840 8hjv:C (3.1) BS02 HEM ? GO:0005506 ... A7NQE7 37737710
    13841 8hjv:C (3.1) BS03 HEM ? GO:0005506 ... A7NQE7 37737710
    13842 8hjv:C (3.1) BS04 HEM ? GO:0005506 ... A7NQE7 37737710
    13843 8hkd:A (2.35) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 N/A
    13844 8hkd:B (2.35) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 N/A
    13845 8hkj:A (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13846 8hkj:B (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13847 8hkj:C (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13848 8hkj:D (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13849 8hkj:E (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13850 8hkj:F (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13851 8hkj:G (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13852 8hkj:H (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13853 8hkj:I (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13854 8hkj:J (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13855 8hkj:K (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13856 8hkj:L (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    13857 8hny:A (2.1) BS01 HEM 1.14.-.- GO:0004497 ... A0A8I3B027 37083030
    13858 8hnz:A (1.5) BS01 HEM 1.14.-.- GO:0004497 ... A0A8I3B027 37083030
    13859 8ho0:A (1.71) BS01 HEM 1.14.-.- GO:0004497 ... A0A8I3B027 37083030
    13860 8ho1:A (2.0) BS01 HEM 1.14.-.- GO:0004497 ... A0A8I3B027 37083030
    13861 8hon:A (2.01) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13862 8hon:B (2.01) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13863 8hoo:A (1.86) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    13864 8hoo:B (1.86) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    13865 8hop:A (1.86) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13866 8hop:B (1.86) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13867 8hoq:A (1.94) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13868 8hoq:B (1.94) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13869 8hor:A (1.95) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13870 8hor:B (1.95) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13871 8hos:A (1.82) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13872 8hos:B (1.82) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13873 8hot:A (1.96) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    13874 8hot:B (1.96) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    13875 8hou:A (1.75) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13876 8hou:B (1.75) BS02 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 37713467
    13877 8hua:A (2.12) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 37032973
    13878 8iag:A (1.5) BS01 HEM N/A GO:0004601 ... N/A N/A
    13879 8iag:B (1.5) BS01 HEM N/A GO:0004601 ... N/A N/A
    13880 8iao:AC (4.2) BS01 HEM N/A N/A P00158 N/A
    13881 8iao:AC (4.2) BS02 HEM N/A N/A P00158 N/A
    13882 8iao:Ac (4.2) BS01 HEM N/A N/A P00158 N/A
    13883 8iao:Ac (4.2) BS02 HEM N/A N/A P00158 N/A
    13884 8iar:AC (3.4) BS01 HEM N/A N/A P00158 N/A
    13885 8iar:AC (3.4) BS02 HEM N/A N/A P00158 N/A
    13886 8iar:Ac (3.4) BS01 HEM N/A N/A P00158 N/A
    13887 8iar:Ac (3.4) BS02 HEM N/A N/A P00158 N/A
    13888 8ib4:AC (4.3) BS01 HEM N/A N/A P00158 N/A
    13889 8ib4:AC (4.3) BS02 HEM N/A N/A P00158 N/A
    13890 8ib4:Ac (4.3) BS01 HEM N/A N/A P00158 N/A
    13891 8ib4:Ac (4.3) BS02 HEM N/A N/A P00158 N/A
    13892 8ib7:AC (3.4) BS01 HEM N/A N/A P00158 N/A
    13893 8ib7:AC (3.4) BS02 HEM N/A N/A P00158 N/A
    13894 8ib7:Ac (3.4) BS01 HEM N/A N/A P00158 N/A
    13895 8ib7:Ac (3.4) BS02 HEM N/A N/A P00158 N/A
    13896 8ib9:AC (4.3) BS01 HEM N/A N/A P00158 N/A
    13897 8ib9:AC (4.3) BS02 HEM N/A N/A P00158 N/A
    13898 8ib9:Ac (4.3) BS01 HEM N/A N/A P00158 N/A
    13899 8ib9:Ac (4.3) BS02 HEM N/A N/A P00158 N/A
    13900 8ibc:AC (3.6) BS01 HEM N/A N/A P00158 N/A
    13901 8ibc:AC (3.6) BS02 HEM N/A N/A P00158 N/A
    13902 8ibc:Ac (3.6) BS01 HEM N/A N/A P00158 N/A
    13903 8ibc:Ac (3.6) BS02 HEM N/A N/A P00158 N/A
    13904 8ibd:AC (4.2) BS01 HEM N/A N/A P00158 N/A
    13905 8ibd:AC (4.2) BS02 HEM N/A N/A P00158 N/A
    13906 8ibd:Ac (4.2) BS01 HEM N/A N/A P00158 N/A
    13907 8ibd:Ac (4.2) BS02 HEM N/A N/A P00158 N/A
    13908 8ibg:AC (3.8) BS01 HEM N/A N/A P00158 N/A
    13909 8ibg:AC (3.8) BS02 HEM N/A N/A P00158 N/A
    13910 8ibg:Ac (3.8) BS01 HEM N/A N/A P00158 N/A
    13911 8ibg:Ac (3.8) BS02 HEM N/A N/A P00158 N/A
    13912 8ic2:AC (6.3) BS01 HEM N/A N/A P00158 N/A
    13913 8ic2:AC (6.3) BS02 HEM N/A N/A P00158 N/A
    13914 8ic2:Ac (6.3) BS01 HEM N/A N/A P00158 N/A
    13915 8ic2:Ac (6.3) BS02 HEM N/A N/A P00158 N/A
    13916 8ic5:AC (4.1) BS01 HEM N/A N/A P00158 N/A
    13917 8ic5:AC (4.1) BS02 HEM N/A N/A P00158 N/A
    13918 8ic5:Ac (4.1) BS01 HEM N/A N/A P00158 N/A
    13919 8ic5:Ac (4.1) BS02 HEM N/A N/A P00158 N/A
    13920 8ing:A (1.98) BS02 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    13921 8iog:A (2.88) BS01 HEM ? GO:0005739 ... P24964 N/A
    13922 8iog:A (2.88) BS02 HEM ? GO:0005739 ... P24964 N/A
    13923 8iog:a (2.88) BS01 HEM ? GO:0005739 ... P24964 N/A
    13924 8iog:a (2.88) BS02 HEM ? GO:0005739 ... P24964 N/A
    13925 8ips:A (3.6) BS01 HEM 7.4.2.- GO:0005524 ... P23886 37144855
    13926 8ips:B (3.6) BS01 HEM 7.4.2.- GO:0005524 ... P29018 37144855
    13927 8ir5:E (2.15) BS01 HEM ? GO:0005506 ... P12238 38297122
    13928 8ir5:F (2.15) BS01 HEM ? GO:0005506 ... P12239 38297122
    13929 8ir5:e (2.15) BS01 HEM ? GO:0005506 ... P12238 38297122
    13930 8ir5:f (2.15) BS01 HEM ? GO:0005506 ... P12239 38297122
    13931 8ir6:E (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    13932 8ir6:F (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    13933 8ir6:e (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    13934 8ir6:f (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    13935 8ir7:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13936 8ir7:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13937 8ir7:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13938 8ir7:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13939 8ir8:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13940 8ir8:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13941 8ir8:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13942 8ir8:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13943 8ir9:E (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    13944 8ir9:F (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    13945 8ir9:e (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    13946 8ir9:f (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    13947 8ira:E (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    13948 8ira:F (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    13949 8ira:e (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    13950 8ira:f (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    13951 8irb:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    13952 8irb:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    13953 8irb:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    13954 8irb:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    13955 8irc:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13956 8irc:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13957 8irc:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13958 8irc:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13959 8ird:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    13960 8ird:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    13961 8ird:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    13962 8ird:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    13963 8ire:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13964 8ire:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13965 8ire:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13966 8ire:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13967 8irf:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13968 8irf:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13969 8irf:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13970 8irf:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13971 8irg:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    13972 8irg:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    13973 8irg:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    13974 8irg:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    13975 8irh:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13976 8irh:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13977 8irh:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13978 8irh:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13979 8iri:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13980 8iri:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13981 8iri:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    13982 8iri:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    13983 8iuf:QC (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13984 8iuf:QC (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13985 8iuf:Qc (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13986 8iuf:Qc (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13987 8iuj:QC (3.06) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13988 8iuj:QC (3.06) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13989 8iuj:Qc (3.06) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13990 8iuj:Qc (3.06) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    13991 8iwh:E (2.68) BS01 HEM ? GO:0005506 ... A0T0U2 37878698
    13992 8iwh:F (2.68) BS01 HEM ? GO:0005506 ... A0T0U1 37878698
    13993 8iwh:V (2.68) BS01 HEM ? GO:0005506 ... A0T0N2 37878698
    13994 8iwh:e (2.68) BS01 HEM ? GO:0005506 ... A0T0U2 37878698
    13995 8iwh:f (2.68) BS01 HEM ? GO:0005506 ... A0T0U1 37878698
    13996 8iwh:v (2.68) BS01 HEM ? GO:0005506 ... A0T0N2 37878698
    13997 8j4k:A (1.46) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    13998 8j4l:A (1.45) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    13999 8j4q:A (2.1) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    14000 8j4q:B (2.1) BS01 HEM 1.11.1.6 GO:0004096 ... A0A6I8WFM0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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