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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 1jio:A (2.1) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    1002 1jip:A (2.0) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    1003 1jju:A (2.05) BS01 HEM ? GO:0009055 ... Q8VUT0 11717396
    1004 1jju:A (2.05) BS02 HEM ? GO:0009055 ... Q8VUT0 11717396
    1005 1jju:B (2.05) BS01 HEM ? N/A Q8VUS7 11717396
    1006 1jl6:A (1.4) BS02 HEM ? GO:0001666 ... P15447 12211015
    1007 1jl7:A (1.4) BS02 HEM ? GO:0001666 ... P02216 12211015
    1008 1jme:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 11695889
    1009 1jme:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 11695889
    1010 1jp6:A (2.3) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11796110
    1011 1jp8:A (2.3) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11796110
    1012 1jp9:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11796110
    1013 1jpb:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11796110
    1014 1jpz:A (1.65) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 11695892
    1015 1jpz:B (1.65) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 11695892
    1016 1jrx:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1017 1jrx:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1018 1jrx:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1019 1jrx:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1020 1jrx:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1021 1jrx:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1022 1jrx:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1023 1jrx:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1024 1jry:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1025 1jry:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1026 1jry:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1027 1jry:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1028 1jry:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1029 1jry:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1030 1jry:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1031 1jry:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1032 1jrz:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1033 1jrz:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1034 1jrz:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1035 1jrz:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1036 1jrz:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1037 1jrz:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1038 1jrz:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1039 1jrz:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    1040 1jw8:A (1.3) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 17680690
    1041 1jwj:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    1042 1jwj:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    1043 1jwk:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    1044 1jwk:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    1045 1jwn:A (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    1046 1jwn:A (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    1047 1jwn:B (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    1048 1jwn:B (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    1049 1jwn:C (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    1050 1jwn:C (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    1051 1jwn:D (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    1052 1jwn:D (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    1053 1jy7:A (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    1054 1jy7:B (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    1055 1jy7:C (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    1056 1jy7:D (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    1057 1jy7:P (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    1058 1jy7:Q (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    1059 1jy7:R (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    1060 1jy7:S (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    1061 1jy7:U (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    1062 1jy7:V (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    1063 1jy7:W (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    1064 1jy7:X (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    1065 1jzk:A (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    1066 1jzk:A (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    1067 1jzk:B (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    1068 1jzk:C (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    1069 1jzk:C (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    1070 1jzk:D (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    1071 1jzk:D (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    1072 1jzl:A (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    1073 1jzl:A (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    1074 1jzl:B (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    1075 1jzl:B (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    1076 1jzm:A (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    1077 1jzm:A (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    1078 1jzm:B (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    1079 1jzm:B (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    1080 1k0y:A (1.87) BS01 HEM ? GO:0004601 ... P69905 11914488
    1081 1k0y:B (1.87) BS01 HEM ? GO:0004601 ... P68871 11914488
    1082 1k0y:C (1.87) BS01 HEM ? GO:0004601 ... P69905 11914488
    1083 1k0y:D (1.87) BS01 HEM ? GO:0004601 ... P68871 11914488
    1084 1k1k:A (2.0) BS01 HEM ? GO:0004601 ... P69905 12454462
    1085 1k1k:B (2.0) BS01 HEM ? GO:0004601 ... P68871 12454462
    1086 1k2o:A (1.65) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11606730
    1087 1k2o:B (1.65) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11606730
    1088 1k2r:A (2.15) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1089 1k2r:B (2.15) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1090 1k2s:A (2.55) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1091 1k2s:B (2.55) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1092 1k2t:A (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1093 1k2t:B (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1094 1k2u:A (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1095 1k2u:B (2.2) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 N/A
    1096 1kb9:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    1097 1kb9:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    1098 1kb9:D (2.3) BS03 HEM 7.1.1.8 GO:0009055 ... P07143 11726495
    1099 1kbi:A (2.3) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 11914072
    1100 1kd2:A (1.87) BS01 HEM ? GO:0004601 ... P69905 N/A
    1101 1kd2:B (1.87) BS01 HEM ? GO:0004601 ... P68871 N/A
    1102 1kd2:C (1.87) BS01 HEM ? GO:0004601 ... P69905 N/A
    1103 1kd2:D (1.87) BS01 HEM ? GO:0004601 ... P68871 N/A
    1104 1kfr:A (1.85) BS01 HEM ? GO:0005344 ... P80721 11914507
    1105 1koi:A (1.08) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 11560480
    1106 1kqf:B (1.6) BS05 HEM 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    1107 1kqf:C (1.6) BS01 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    1108 1kqf:C (1.6) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    1109 1kqg:B (2.8) BS05 HEM 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    1110 1kqg:C (2.8) BS01 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    1111 1kqg:C (2.8) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    1112 1kr7:A (1.5) BS01 HEM ? GO:0005344 ... O76242 12015154
    1113 1krj:A (2.0) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 10608846
    1114 1kss:A (1.8) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1115 1kss:A (1.8) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1116 1kss:A (1.8) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1117 1kss:A (1.8) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1118 1ksu:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1119 1ksu:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1120 1ksu:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1121 1ksu:A (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1122 1ksu:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1123 1ksu:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1124 1ksu:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1125 1ksu:B (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    1126 1kxm:A (1.74) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11967381
    1127 1kxn:A (1.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11967381
    1128 1kzm:A (2.0) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 12351824
    1129 1l0l:C (2.35) BS01 HEM ? GO:0005739 ... P00157 12269811
    1130 1l0l:C (2.35) BS02 HEM ? GO:0005739 ... P00157 12269811
    1131 1l0l:D (2.35) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12269811
    1132 1l0n:C (2.6) BS01 HEM ? GO:0005739 ... P00157 12269811
    1133 1l0n:C (2.6) BS02 HEM ? GO:0005739 ... P00157 12269811
    1134 1l0n:D (2.6) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 12269811
    1135 1l2k:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 12062378
    1136 1l9b:C (2.4) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    1137 1l9j:C (3.25) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    1138 1l9j:D (3.25) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    1139 1la6:A (2.0) BS01 HEM ? GO:0004601 ... P45718 12093902
    1140 1la6:B (2.0) BS01 HEM ? GO:0004601 ... P45720 12093902
    1141 1lco:A (2.9) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    1142 1ldc:A (2.9) BS02 HEM 1.1.2.3 GO:0016491 ... P00175 7632684
    1143 1lfk:A (1.7) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    1144 1lfl:A (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    1145 1lfl:B (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    1146 1lfl:C (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    1147 1lfl:D (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    1148 1lfl:P (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    1149 1lfl:Q (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    1150 1lfl:R (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    1151 1lfl:S (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    1152 1lfq:A (2.6) BS01 HEM ? GO:0004601 ... P69905 12077435
    1153 1lfq:B (2.6) BS01 HEM ? GO:0004601 ... P68871 12077435
    1154 1lft:A (2.6) BS01 HEM ? GO:0004601 ... P69905 12077435
    1155 1lft:B (2.6) BS01 HEM ? GO:0004601 ... P68871 12077435
    1156 1lfv:A (2.8) BS01 HEM ? GO:0004601 ... P69905 12077435
    1157 1lfv:B (2.8) BS01 HEM ? GO:0004601 ... P68871 12077435
    1158 1lfy:A (3.3) BS01 HEM ? GO:0004601 ... P69905 12077435
    1159 1lfy:B (3.3) BS01 HEM ? GO:0004601 ... P68871 12077435
    1160 1lfz:A (3.1) BS01 HEM ? GO:0004601 ... P69905 12077435
    1161 1lfz:B (3.1) BS01 HEM ? GO:0004601 ... P68871 12077435
    1162 1lg9:A (2.0) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    1163 1lga:A (2.03) BS03 HEM 1.11.1.14 GO:0000302 ... P49012 8440725
    1164 1lga:B (2.03) BS03 HEM 1.11.1.14 GO:0000302 ... P49012 8440725
    1165 1lgf:A (2.2) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    1166 1lh1:A (2.0) BS01 HEM ? GO:0005344 ... P02240 N/A
    1167 1lh2:A (2.0) BS01 HEM ? GO:0005344 ... P02240 N/A
    1168 1lh3:A (2.0) BS01 HEM ? GO:0005344 ... P02240 N/A
    1169 1lh5:A (2.0) BS01 HEM ? GO:0005344 ... P02240 N/A
    1170 1lh6:A (2.0) BS01 HEM ? GO:0005344 ... P02240 N/A
    1171 1lh7:A (2.0) BS01 HEM ? GO:0005344 ... P02240 N/A
    1172 1lhs:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P56208 7714901
    1173 1lht:A (2.0) BS02 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P56208 7714901
    1174 1lj0:A (2.0) BS01 HEM ? GO:0020037 ... P04166 12269800
    1175 1lj0:B (2.0) BS01 HEM ? GO:0020037 ... P04166 12269800
    1176 1lj0:C (2.0) BS01 HEM ? GO:0020037 ... P04166 12269800
    1177 1lj0:D (2.0) BS01 HEM ? GO:0020037 ... P04166 12269800
    1178 1lj1:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1179 1lj1:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1180 1lj1:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1181 1lj1:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1182 1lj1:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1183 1lj1:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1184 1lj1:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1185 1lj1:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12356299
    1186 1ljw:A (2.16) BS01 HEM ? GO:0004601 ... P69905 12454461
    1187 1ljw:B (2.16) BS02 HEM ? GO:0004601 ... P68871 12454461
    1188 1llp:A (1.7) BS04 HEM 1.11.1.14 GO:0000302 ... P49012 10024453
    1189 1lm3:B (2.7) BS02 HEM ? GO:0005506 ... P0ABE7 11914078
    1190 1lm3:D (2.7) BS01 HEM ? GO:0005506 ... P0ABE7 11914078
    1191 1lqx:A (1.8) BS01 HEM ? GO:0020037 ... P00171 12136141
    1192 1lr6:A (1.9) BS01 HEM ? GO:0020037 ... P00171 12136141
    1193 1ls9:A (1.3) BS01 HEM ? GO:0005506 ... P83391 12475218
    1194 1lsv:A (2.4) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    1195 1lsw:A (2.2) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    1196 1lsx:A (2.7) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    1197 1lt0:A (2.4) BS02 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    1198 1ltd:A (2.6) BS03 HEM 1.1.2.3 GO:0016491 ... P00175 8003966
    1199 1ltw:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    1200 1lue:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 12939145
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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