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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11601 6xa2:G (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    11602 6xa2:H (2.64) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    11603 6xa3:A (2.96) BS01 HEM ? GO:0004497 ... D3Y1J3 33569241
    11604 6xai:A (1.489) BS01 HEM N/A GO:0004497 ... N/A 32786740
    11605 6xai:B (1.489) BS01 HEM N/A GO:0004497 ... N/A 32786740
    11606 6xaj:A (1.498) BS01 HEM N/A GO:0004497 ... N/A 32786740
    11607 6xak:A (1.479) BS01 HEM N/A GO:0004497 ... N/A 32786740
    11608 6xak:B (1.479) BS01 HEM N/A GO:0004497 ... N/A 32786740
    11609 6xal:A (1.349) BS01 HEM N/A GO:0004497 ... N/A 32786740
    11610 6xam:A (1.481) BS01 HEM N/A GO:0004497 ... N/A 32786740
    11611 6xd9:A (2.1) BS01 HEM ? GO:0004601 ... P69905 33219275
    11612 6xd9:B (2.1) BS01 HEM ? GO:0004601 ... P68871 33219275
    11613 6xd9:C (2.1) BS01 HEM ? GO:0004601 ... P69905 33219275
    11614 6xd9:D (2.1) BS01 HEM ? GO:0004601 ... P68871 33219275
    11615 6xdt:A (1.9) BS01 HEM ? GO:0004601 ... P69905 33205981
    11616 6xdt:B (1.9) BS01 HEM ? GO:0004601 ... P68871 33205981
    11617 6xdt:C (1.9) BS02 HEM ? GO:0004601 ... P69905 33205981
    11618 6xdt:D (1.9) BS01 HEM ? GO:0004601 ... P68871 33205981
    11619 6xe7:A (2.0) BS01 HEM ? GO:0004601 ... P69905 33205981
    11620 6xe7:B (2.0) BS01 HEM ? GO:0004601 ... P68871 33205981
    11621 6xe7:C (2.0) BS01 HEM ? GO:0004601 ... P69905 33205981
    11622 6xe7:D (2.0) BS01 HEM ? GO:0004601 ... P68871 33205981
    11623 6xk3:A (1.95) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    11624 6xk4:A (2.13) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    11625 6xk5:A (1.87) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    11626 6xk6:A (1.84) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    11627 6xk7:A (1.85) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    11628 6xk8:A (2.25) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    11629 6xmc:A (1.85) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 N/A
    11630 6xv4:A (1.9) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 32152099
    11631 6xvf:C (3.5) BS01 HEM ? GO:0005739 ... P00157 32626661
    11632 6xvf:C (3.5) BS02 HEM ? GO:0005739 ... P00157 32626661
    11633 6y1t:A (1.5) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 34337604
    11634 6y2y:A (1.7) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 34337604
    11635 6y9b:A (2.97) BS01 HEM 1.16.1.- GO:0005515 ... Q9UHE8 32409586
    11636 6y9b:B (2.97) BS01 HEM 1.16.1.- GO:0005515 ... Q9UHE8 32409586
    11637 6y9b:C (2.97) BS01 HEM 1.16.1.- GO:0005515 ... Q9UHE8 32409586
    11638 6ych:A (1.88) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11639 6yci:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11640 6ycj:A (1.64) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11641 6yck:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11642 6ycl:A (1.7) BS02 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11643 6ycm:A (1.6) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11644 6ycn:A (1.83) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11645 6yco:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11646 6ycp:A (1.8) BS01 HEM 1.14.14.- GO:0004497 ... P0DPQ7 34467290
    11647 6ymx:C (3.17) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    11648 6ymx:C (3.17) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    11649 6ymx:D (3.17) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 33016568
    11650 6ymx:N (3.17) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    11651 6ymx:N (3.17) BS03 HEM 7.1.1.8 GO:0005739 ... P00163 33016568
    11652 6ymx:O (3.17) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 33016568
    11653 6yp7:E (3.8) BS01 HEM ? GO:0005506 ... P13554 33207833
    11654 6yp7:F (3.8) BS01 HEM ? GO:0009523 ... P62096 33207833
    11655 6yp7:e (3.8) BS01 HEM ? GO:0005506 ... P13554 33207833
    11656 6yp7:f (3.8) BS01 HEM ? GO:0009523 ... P62096 33207833
    11657 6yr4:A (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11658 6yr4:B (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11659 6yr4:C (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11660 6yr4:D (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11661 6yr4:E (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11662 6yr4:F (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11663 6yrc:A (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11664 6yrc:B (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11665 6yrc:C (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11666 6yrc:D (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11667 6yrc:E (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11668 6yrc:F (1.99) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11669 6yrd:A (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11670 6yrd:B (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11671 6yrd:C (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11672 6yrd:D (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11673 6yrd:E (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11674 6yrd:F (1.75) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11675 6yrj:A (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11676 6yrj:B (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11677 6yrj:C (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11678 6yrj:D (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11679 6yrj:E (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11680 6yrj:F (1.85) BS01 HEM N/A GO:0004601 ... N/A 32780931
    11681 6z1m:A (2.45) BS01 HEM N/A GO:0004553 ... N/A 33452262
    11682 6z1m:B (2.45) BS01 HEM N/A GO:0004553 ... N/A 33452262
    11683 6z1m:C (2.45) BS01 HEM N/A GO:0004553 ... N/A 33452262
    11684 6z4r:A (1.96) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 33880851
    11685 6z4t:A (1.23) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 33880851
    11686 6zfs:C (3.5) BS01 HEM ? GO:0005739 ... P00157 N/A
    11687 6zfs:C (3.5) BS02 HEM ? GO:0005739 ... P00157 N/A
    11688 6zft:C (3.3) BS01 HEM ? GO:0005739 ... P00157 N/A
    11689 6zft:C (3.3) BS02 HEM ? GO:0005739 ... P00157 N/A
    11690 6zfu:C (3.5) BS01 HEM ? GO:0005739 ... P00157 N/A
    11691 6zfu:C (3.5) BS02 HEM ? GO:0005739 ... P00157 N/A
    11692 6zhz:A (2.2) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11693 6zhz:B (2.2) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11694 6zhz:C (2.2) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11695 6zhz:D (2.2) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11696 6zhz:E (2.2) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11697 6zhz:F (2.2) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11698 6zi2:A (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11699 6zi2:B (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11700 6zi2:C (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11701 6zi2:D (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11702 6zi2:E (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11703 6zi2:F (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11704 6zi2:G (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11705 6zi2:H (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11706 6zi2:I (2.93) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11707 6zi3:A (2.08) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11708 6zi3:B (2.08) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11709 6zi3:C (2.08) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11710 6zi3:D (2.08) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11711 6zi3:E (2.08) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11712 6zi3:F (2.08) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11713 6zi7:A (2.28) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11714 6zi7:B (2.28) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11715 6zi7:C (2.28) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11716 6zi7:D (2.28) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11717 6zi7:E (2.28) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11718 6zi7:F (2.28) BS01 HEM ? GO:0004497 ... Q59819 33036250
    11719 6zji:AP1 (3.7) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 N/A
    11720 6zji:BP1 (3.7) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 N/A
    11721 6zmq:A (2.67) BS01 HEM ? GO:0015232 ... Q72IU4 33958791
    11722 6zmx:A (1.389) BS01 HEM ? GO:0004601 ... P81023 33950023
    11723 6zmx:B (1.389) BS01 HEM ? GO:0004601 ... P84479 33950023
    11724 6zmx:C (1.389) BS01 HEM ? GO:0004601 ... P81023 33950023
    11725 6zmx:D (1.389) BS01 HEM ? GO:0004601 ... P84479 33950023
    11726 6zmy:A (1.655) BS01 HEM ? GO:0004601 ... P81023 33950023
    11727 6zmy:B (1.655) BS01 HEM ? GO:0005833 ... G1U9Q8 33950023
    11728 6zmy:C (1.655) BS01 HEM ? GO:0004601 ... P81023 33950023
    11729 6zmy:D (1.655) BS01 HEM ? GO:0005833 ... G1U9Q8 33950023
    11730 7a2i:B (3.3) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    11731 7a44:A (1.75) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 33731353
    11732 7a45:A (1.75) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 33731353
    11733 7a62:A (2.43796) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33263327
    11734 7a62:B (2.43796) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33263327
    11735 7a62:C (2.43796) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33263327
    11736 7a62:D (2.43796) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33263327
    11737 7a7a:A (3.08) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    11738 7a7a:B (3.08) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    11739 7a7c:B (3.16) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    11740 7abw:A (3.35) BS01 HEM ? GO:0016020 ... Q9I117 34417315
    11741 7abw:A (3.35) BS02 HEM ? GO:0016020 ... Q9I117 34417315
    11742 7abw:B (3.35) BS01 HEM ? GO:0016020 ... Q9I117 34417315
    11743 7abw:B (3.35) BS02 HEM ? GO:0016020 ... Q9I117 34417315
    11744 7acp:A (1.45) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    11745 7acp:B (1.45) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    11746 7adf:A (1.85) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    11747 7adf:B (1.85) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    11748 7adq:A (2.01) BS01 HEM ? GO:0004601 ... Q9NAV7 36071813
    11749 7adq:B (2.01) BS01 HEM ? GO:0004601 ... Q9NAV7 36071813
    11750 7adx:A (1.85) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    11751 7adx:B (1.85) BS01 HEM ? GO:0004601 ... Q9NAV7 N/A
    11752 7aet:AAA (2.53) BS01 HEM ? GO:0004601 ... P69905 33723266
    11753 7aet:BBB (2.53) BS01 HEM ? GO:0004601 ... P68871 33723266
    11754 7aet:CCC (2.53) BS01 HEM ? GO:0004601 ... P69905 33723266
    11755 7aet:DDD (2.53) BS01 HEM ? GO:0004601 ... P68871 33723266
    11756 7aeu:AAA (2.54) BS01 HEM ? GO:0004601 ... P69905 33723266
    11757 7aeu:BBB (2.54) BS01 HEM ? GO:0004601 ... P68871 33723266
    11758 7aeu:CCC (2.54) BS01 HEM ? GO:0004601 ... P69905 33723266
    11759 7aeu:DDD (2.54) BS01 HEM ? GO:0004601 ... P68871 33723266
    11760 7aev:AAA (2.77) BS01 HEM ? GO:0004601 ... P69905 33723266
    11761 7aev:BBB (2.77) BS01 HEM ? GO:0004601 ... P68871 33723266
    11762 7aev:CCC (2.77) BS01 HEM ? GO:0004601 ... P69905 33723266
    11763 7aev:DDD (2.77) BS01 HEM ? GO:0004601 ... P68871 33723266
    11764 7ag8:A (2.68) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    11765 7ag8:B (2.68) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 33444527
    11766 7ah0:A (1.91) BS01 HEM N/A N/A N/A 37487099
    11767 7ah0:A (1.91) BS02 HEM N/A N/A N/A 37487099
    11768 7ah4:A (2.401) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33557523
    11769 7ah4:B (2.401) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33557523
    11770 7ah5:A (2.9) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33557523
    11771 7ah5:B (2.9) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33557523
    11772 7ah6:A (2.998) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33557523
    11773 7ah6:B (2.998) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 33557523
    11774 7anv:A (1.65) BS01 HEM N/A GO:0004601 ... N/A 33369202
    11775 7ao7:A (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    11776 7ao7:B (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    11777 7ao7:C (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    11778 7ao7:D (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    11779 7ao7:E (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    11780 7ao7:F (2.55) BS01 HEM ? GO:0004497 ... Q11ZY2 N/A
    11781 7asb:A (1.4) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    11782 7asb:B (1.4) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    11783 7ati:A (1.51) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    11784 7ati:B (1.51) BS01 HEM ? GO:0016491 ... B8HNS6 33586945
    11785 7atj:A (1.47) BS04 HEM 1.11.1.7 GO:0004601 ... P00433 10574977
    11786 7ayx:A (2.53) BS01 HEM ? GO:0004497 ... D6AU61 34725865
    11787 7ayx:B (2.53) BS01 HEM ? GO:0004497 ... D6AU61 34725865
    11788 7b04:A (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    11789 7b04:C (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    11790 7b04:D (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    11791 7b04:F (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    11792 7b04:G (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    11793 7b04:I (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    11794 7b04:J (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    11795 7b04:L (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    11796 7b04:M (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    11797 7b04:O (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    11798 7b04:P (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A
    11799 7b04:R (2.97) BS01 HEM ? GO:0020037 ... Q1PZD4 N/A
    11800 7b04:S (2.97) BS05 HEM 1.7.99.4 GO:0009055 ... Q1PZD5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218