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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 1fag:C (2.7) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 9033595
    602 1fag:D (2.7) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 9033595
    603 1fah:A (2.3) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 7578081
    604 1fah:B (2.3) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 7578081
    605 1faw:A (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    606 1faw:B (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    607 1faw:C (3.09) BS01 HEM ? GO:0004601 ... P01989 11717498
    608 1faw:D (3.09) BS01 HEM ? GO:0004601 ... P02117 11717498
    609 1fcb:A (2.4) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 2329585
    610 1fcs:A (1.6) BS02 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8462669
    611 1fdh:A (2.5) BS01 HEM ? GO:0004601 ... P69905 881729
    612 1fdh:B (2.5) BS01 HEM ? GO:0004601 ... P69905 881729
    613 1fdh:G (2.5) BS01 HEM ? GO:0004601 ... P69892 881729
    614 1fdh:H (2.5) BS01 HEM ? GO:0004601 ... P69892 881729
    615 1fft:A (3.5) BS02 HEM 7.1.1.3 GO:0004129 ... P0ABI8 11017202
    616 1fft:F (3.5) BS02 HEM 7.1.1.3 GO:0004129 ... P0ABI8 11017202
    617 1fgj:A (2.8) BS01 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    618 1fgj:A (2.8) BS02 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    619 1fgj:A (2.8) BS03 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    620 1fgj:A (2.8) BS05 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    621 1fgj:A (2.8) BS06 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    622 1fgj:A (2.8) BS07 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    623 1fgj:A (2.8) BS08 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    624 1fgj:B (2.8) BS01 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    625 1fgj:B (2.8) BS02 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    626 1fgj:B (2.8) BS03 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    627 1fgj:B (2.8) BS05 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    628 1fgj:B (2.8) BS06 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    629 1fgj:B (2.8) BS07 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    630 1fgj:B (2.8) BS08 HEM 1.7.2.6
    1.7.2.9    		 GO:0016491 ... Q50925 9095195
    631 1fhb:A (-1.00) BS02 HEM ? GO:0005515 ... P00044 7547866
    632 1fhf:A (2.8) BS03 HEM 1.11.1.7 GO:0004601 ... O22443 11266599
    633 1fhf:B (2.8) BS03 HEM 1.11.1.7 GO:0004601 ... O22443 11266599
    634 1fhf:C (2.8) BS03 HEM 1.11.1.7 GO:0004601 ... O22443 11266599
    635 1fhj:A (1.8) BS01 HEM ? GO:0004601 ... P60523 14683506
    636 1fhj:B (1.8) BS01 HEM ? GO:0004601 ... P60526 14683506
    637 1fhj:C (1.8) BS01 HEM ? GO:0004601 ... P60523 14683506
    638 1fhj:D (1.8) BS01 HEM ? GO:0004601 ... P60526 14683506
    639 1flp:A (1.5) BS01 HEM ? GO:0005576 ... P41260 7966324
    640 1foi:A (1.93) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    641 1foi:B (1.93) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    642 1foj:A (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    643 1foj:B (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    644 1fol:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    645 1fol:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    646 1foo:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    647 1foo:B (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    648 1fop:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    649 1fop:B (2.3) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    650 1fsl:A (2.3) BS01 HEM ? GO:0005344 ... P02238 15299933
    651 1fsl:B (2.3) BS01 HEM ? GO:0005344 ... P02238 15299933
    652 1fsx:A (2.1) BS01 HEM ? GO:0004601 ... P01966 11369847
    653 1fsx:B (2.1) BS01 HEM ? GO:0004601 ... P02070 11369847
    654 1fsx:C (2.1) BS01 HEM ? GO:0004601 ... P01966 11369847
    655 1fsx:D (2.1) BS01 HEM ? GO:0004601 ... P02070 11369847
    656 1ft5:A (1.6) BS01 HEM ? GO:0042597 ... Q57142 11372197
    657 1ft5:A (1.6) BS02 HEM ? GO:0042597 ... Q57142 11372197
    658 1ft5:A (1.6) BS03 HEM ? GO:0042597 ... Q57142 11372197
    659 1ft5:A (1.6) BS04 HEM ? GO:0042597 ... Q57142 11372197
    660 1ft9:A (2.6) BS01 HEM ? GO:0003677 ... P72322 11017196
    661 1ft9:A (2.6) BS02 HEM ? GO:0003677 ... P72322 11017196
    662 1ft9:B (2.6) BS01 HEM ? GO:0003677 ... P72322 11017196
    663 1ft9:B (2.6) BS02 HEM ? GO:0003677 ... P72322 11017196
    664 1g08:A (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    665 1g08:B (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    666 1g08:C (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    667 1g08:D (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    668 1g09:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    669 1g09:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    670 1g09:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    671 1g09:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    672 1g0a:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    673 1g0a:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    674 1g0a:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    675 1g0a:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    676 1g0b:A (1.9) BS01 HEM ? GO:0004601 ... P01958 11112521
    677 1g0b:B (1.9) BS01 HEM ? GO:0004601 ... P02062 11112521
    678 1g9v:A (1.85) BS01 HEM ? GO:0004601 ... P69905 11316875
    679 1g9v:B (1.85) BS02 HEM ? GO:0004601 ... P68871 11316875
    680 1g9v:C (1.85) BS02 HEM ? GO:0004601 ... P69905 11316875
    681 1g9v:D (1.85) BS02 HEM ? GO:0004601 ... P68871 11316875
    682 1gbu:A (1.8) BS01 HEM ? GO:0004601 ... P69905 9876125
    683 1gbu:B (1.8) BS01 HEM ? GO:0004601 ... P68871 9876125
    684 1gbu:C (1.8) BS01 HEM ? GO:0004601 ... P69905 9876125
    685 1gbu:D (1.8) BS01 HEM ? GO:0004601 ... P68871 9876125
    686 1gbv:A (2.0) BS01 HEM ? GO:0004601 ... P69905 9876125
    687 1gbv:B (2.0) BS01 HEM ? GO:0004601 ... P68871 9876125
    688 1gbv:C (2.0) BS01 HEM ? GO:0004601 ... P69905 9876125
    689 1gbv:D (2.0) BS01 HEM ? GO:0004601 ... P68871 9876125
    690 1gcv:A (2.0) BS01 HEM ? GO:0004601 ... Q9YGW2 11243818
    691 1gcv:B (2.0) BS01 HEM ? GO:0004601 ... Q9YGW1 11243818
    692 1gcv:C (2.0) BS01 HEM ? GO:0004601 ... Q9YGW2 11243818
    693 1gcv:D (2.0) BS01 HEM ? GO:0004601 ... Q9YGW1 11243818
    694 1gcw:A (2.0) BS01 HEM ? GO:0004601 ... Q9YGW2 11243818
    695 1gcw:B (2.0) BS01 HEM ? GO:0004601 ... Q9YGW1 11243818
    696 1gcw:C (2.0) BS01 HEM ? GO:0004601 ... Q9YGW2 11243818
    697 1gcw:D (2.0) BS01 HEM ? GO:0004601 ... Q9YGW1 11243818
    698 1gdi:A (1.8) BS01 HEM ? GO:0005344 ... P02240 8950274
    699 1gdj:A (1.7) BS01 HEM ? GO:0005344 ... P02240 7643380
    700 1gdk:A (1.8) BS01 HEM ? GO:0005344 ... P02240 N/A
    701 1gdl:A (1.8) BS01 HEM ? GO:0005344 ... P02240 8950274
    702 1geb:A (2.03) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11098139
    703 1ged:A (2.0) BS03 HEM 1.7.1.14 GO:0004497 ... P23295 11076941
    704 1gei:A (1.6) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11258878
    705 1gej:A (1.5) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11258878
    706 1gek:A (1.7) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11258878
    707 1gem:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11258878
    708 1gg9:A (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    709 1gg9:B (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    710 1gg9:C (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    711 1gg9:D (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    712 1ggf:A (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    713 1ggf:B (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    714 1ggf:C (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    715 1ggf:D (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    716 1ggh:A (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    717 1ggh:B (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    718 1ggh:C (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    719 1ggh:D (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    720 1ggk:A (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    721 1ggk:B (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    722 1ggk:C (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    723 1ggk:D (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    724 1gjm:A (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    725 1gjn:A (1.35) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 11935353
    726 1gks:A (-1.00) BS01 HEM ? GO:0005506 ... P00122 8969306
    727 1gli:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    728 1gli:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    729 1gli:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    730 1gli:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    731 1gvh:A (2.19) BS02 HEM 1.14.12.17 GO:0005344 ... P24232 11964402
    732 1gw2:A (2.15) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    733 1gwe:A (0.88) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 12454454
    734 1gwf:A (1.96) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 12454454
    735 1gwh:A (1.74) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 12454454
    736 1gwi:A (1.92) BS01 HEM ? GO:0004497 ... Q9L142 12519772
    737 1gwi:B (1.92) BS01 HEM ? GO:0004497 ... Q9L142 12519772
    738 1gwo:A (2.07) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    739 1gwt:A (1.7) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    740 1gwu:A (1.31) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    741 1gx2:A (2.2) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    742 1gx2:B (2.2) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    743 1gza:A (2.06) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 9038188
    744 1gzb:A (1.8) BS03 HEM 1.11.1.7 GO:0000302 ... P28313 8557120
    745 1gzx:A (2.1) BS01 HEM ? GO:0004601 ... P69905 8642597
    746 1gzx:B (2.1) BS01 HEM ? GO:0004601 ... P68871 8642597
    747 1gzx:C (2.1) BS01 HEM ? GO:0004601 ... P69905 8642597
    748 1gzx:D (2.1) BS01 HEM ? GO:0004601 ... P68871 8642597
    749 1h1o:A (2.13) BS01 HEM ? GO:0005506 ... P74917 12737820
    750 1h1o:A (2.13) BS02 HEM ? GO:0005506 ... P74917 12737820
    751 1h1o:B (2.13) BS01 HEM ? GO:0005506 ... P74917 12737820
    752 1h1o:B (2.13) BS02 HEM ? GO:0005506 ... P74917 12737820
    753 1h1x:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 14563209
    754 1h3j:A (2.0) BS01 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    755 1h3j:B (2.0) BS01 HEM 1.11.1.7 GO:0000302 ... P28314 12777760
    756 1h55:A (1.61) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    757 1h57:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    758 1h58:A (1.7) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    759 1h5a:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    760 1h5c:A (1.62) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    761 1h5d:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    762 1h5e:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    763 1h5f:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    764 1h5g:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    765 1h5h:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    766 1h5i:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    767 1h5j:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    768 1h5k:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    769 1h5l:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    770 1h5m:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    771 1h5z:A (2.05) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 15530358
    772 1h6n:A (2.11) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 12486720
    773 1h7k:A (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 11695923
    774 1h97:A (1.17) BS01 HEM ? GO:0005344 ... P80721 11399085
    775 1h97:B (1.17) BS01 HEM ? GO:0005344 ... P80721 11399085
    776 1hab:A (2.3) BS01 HEM ? GO:0004601 ... P69905 9223274
    777 1hab:B (2.3) BS01 HEM ? GO:0004601 ... P68871 9223274
    778 1hab:C (2.3) BS01 HEM ? GO:0004601 ... P69905 9223274
    779 1hab:D (2.3) BS01 HEM ? GO:0004601 ... P68871 9223274
    780 1hac:A (2.6) BS01 HEM ? GO:0004601 ... P69905 9223274
    781 1hac:B (2.6) BS01 HEM ? GO:0004601 ... P68871 9223274
    782 1hac:C (2.6) BS01 HEM ? GO:0004601 ... P69905 9223274
    783 1hac:D (2.6) BS01 HEM ? GO:0004601 ... P68871 9223274
    784 1hba:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1567857
    785 1hba:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1567857
    786 1hba:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1567857
    787 1hba:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1567857
    788 1hbb:A (1.9) BS01 HEM ? GO:0004601 ... P69905 1567857
    789 1hbb:B (1.9) BS01 HEM ? GO:0004601 ... P68871 1567857
    790 1hbb:C (1.9) BS01 HEM ? GO:0004601 ... P69905 1567857
    791 1hbb:D (1.9) BS01 HEM ? GO:0004601 ... P68871 1567857
    792 1hbg:A (1.5) BS01 HEM ? GO:0001666 ... P02216 2585515
    793 1hbh:A (2.2) BS01 HEM ? GO:0004601 ... P80043 7623382
    794 1hbh:B (2.2) BS01 HEM ? GO:0004601 ... P80044 7623382
    795 1hbh:C (2.2) BS01 HEM ? GO:0004601 ... P80043 7623382
    796 1hbh:D (2.2) BS01 HEM ? GO:0004601 ... P80044 7623382
    797 1hbi:A (1.7) BS01 HEM ? GO:0001666 ... P02213 7929217
    798 1hbi:A (1.7) BS03 HEM ? GO:0001666 ... P02213 7929217
    799 1hbi:B (1.7) BS01 HEM ? GO:0001666 ... P02213 7929217
    800 1hbi:B (1.7) BS02 HEM ? GO:0001666 ... P02213 7929217
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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