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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 3uh6:A (2.25) BS01 HEM ? GO:0001666 ... P02213 22171006
    6002 3uh6:A (2.25) BS02 HEM ? GO:0001666 ... P02213 22171006
    6003 3uh6:B (2.25) BS01 HEM ? GO:0001666 ... P02213 22171006
    6004 3uh6:B (2.25) BS02 HEM ? GO:0001666 ... P02213 22171006
    6005 3uh7:A (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    6006 3uh7:A (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    6007 3uh7:B (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    6008 3uh7:B (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    6009 3uhb:A (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6010 3uhb:A (1.6) BS02 HEM ? GO:0001666 ... P02213 22171006
    6011 3uhb:B (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6012 3uhb:B (1.6) BS02 HEM ? GO:0001666 ... P02213 22171006
    6013 3uhc:A (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6014 3uhc:A (1.6) BS02 HEM ? GO:0001666 ... P02213 22171006
    6015 3uhc:B (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6016 3uhc:B (1.6) BS02 HEM ? GO:0001666 ... P02213 22171006
    6017 3uhd:A (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6018 3uhd:B (1.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6019 3uhe:A (2.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6020 3uhe:A (2.6) BS02 HEM ? GO:0001666 ... P02213 22171006
    6021 3uhe:B (2.6) BS01 HEM ? GO:0001666 ... P02213 22171006
    6022 3uhe:B (2.6) BS02 HEM ? GO:0001666 ... P02213 22171006
    6023 3uhg:A (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    6024 3uhg:A (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    6025 3uhg:B (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    6026 3uhg:B (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    6027 3uhh:A (1.5) BS01 HEM ? GO:0001666 ... P02213 22171006
    6028 3uhh:A (1.5) BS02 HEM ? GO:0001666 ... P02213 22171006
    6029 3uhh:B (1.5) BS01 HEM ? GO:0001666 ... P02213 22171006
    6030 3uhh:B (1.5) BS02 HEM ? GO:0001666 ... P02213 22171006
    6031 3uhi:A (2.5) BS01 HEM ? GO:0001666 ... P02213 22171006
    6032 3uhi:B (2.5) BS01 HEM ? GO:0001666 ... P02213 22171006
    6033 3uhi:C (2.5) BS01 HEM ? GO:0001666 ... P02213 22171006
    6034 3uhi:D (2.5) BS01 HEM ? GO:0001666 ... P02213 22171006
    6035 3uhk:A (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6036 3uhk:A (2.0) BS02 HEM ? GO:0001666 ... P02213 22171006
    6037 3uhk:B (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6038 3uhk:C (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6039 3uhk:D (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6040 3uhn:A (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6041 3uhn:B (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6042 3uhn:B (2.0) BS02 HEM ? GO:0001666 ... P02213 22171006
    6043 3uhq:A (1.95) BS01 HEM ? GO:0001666 ... P02213 22171006
    6044 3uhq:A (1.95) BS02 HEM ? GO:0001666 ... P02213 22171006
    6045 3uhq:B (1.95) BS01 HEM ? GO:0001666 ... P02213 22171006
    6046 3uhq:B (1.95) BS02 HEM ? GO:0001666 ... P02213 22171006
    6047 3uhr:A (1.9) BS01 HEM ? GO:0001666 ... P02213 22171006
    6048 3uhr:A (1.9) BS02 HEM ? GO:0001666 ... P02213 22171006
    6049 3uhr:B (1.9) BS01 HEM ? GO:0001666 ... P02213 22171006
    6050 3uhr:B (1.9) BS02 HEM ? GO:0001666 ... P02213 22171006
    6051 3uhs:A (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    6052 3uhs:A (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006
    6053 3uhs:B (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    6054 3uhs:B (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006
    6055 3uht:A (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6056 3uht:A (2.0) BS02 HEM ? GO:0001666 ... P02213 22171006
    6057 3uht:B (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6058 3uht:B (2.0) BS02 HEM ? GO:0001666 ... P02213 22171006
    6059 3uhu:A (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    6060 3uhu:A (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006
    6061 3uhu:B (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    6062 3uhu:B (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006
    6063 3uhv:A (1.75) BS01 HEM ? GO:0001666 ... P02213 22171006
    6064 3uhv:A (1.75) BS02 HEM ? GO:0001666 ... P02213 22171006
    6065 3uhv:B (1.75) BS01 HEM ? GO:0001666 ... P02213 22171006
    6066 3uhv:B (1.75) BS02 HEM ? GO:0001666 ... P02213 22171006
    6067 3uhw:A (2.05) BS01 HEM ? GO:0001666 ... P02213 22171006
    6068 3uhw:B (2.05) BS01 HEM ? GO:0001666 ... P02213 22171006
    6069 3uhw:B (2.05) BS02 HEM ? GO:0001666 ... P02213 22171006
    6070 3uhx:A (1.7) BS01 HEM ? GO:0001666 ... P02213 22171006
    6071 3uhx:B (1.7) BS01 HEM ? GO:0001666 ... P02213 22171006
    6072 3uhy:A (2.2) BS01 HEM ? GO:0001666 ... P02213 22171006
    6073 3uhy:A (2.2) BS02 HEM ? GO:0001666 ... P02213 22171006
    6074 3uhy:B (2.2) BS01 HEM ? GO:0001666 ... P02213 22171006
    6075 3uhy:B (2.2) BS02 HEM ? GO:0001666 ... P02213 22171006
    6076 3uhz:A (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6077 3uhz:A (2.0) BS02 HEM ? GO:0001666 ... P02213 22171006
    6078 3uhz:B (2.0) BS01 HEM ? GO:0001666 ... P02213 22171006
    6079 3uhz:B (2.0) BS02 HEM ? GO:0001666 ... P02213 22171006
    6080 3ui0:A (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    6081 3ui0:A (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    6082 3ui0:B (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    6083 3ui0:B (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    6084 3uof:A (2.902) BS03 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6085 3uof:B (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6086 3uof:C (2.902) BS03 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6087 3uof:D (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6088 3uof:E (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6089 3uof:F (2.902) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6090 3uoi:A (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6091 3uoi:B (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6092 3uoi:C (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6093 3uoi:D (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6094 3uoi:E (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6095 3uoi:F (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6096 3uoi:G (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6097 3uoi:H (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6098 3uoi:I (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6099 3uoi:J (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6100 3uoi:K (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6101 3uoi:L (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6102 3uoi:M (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6103 3uoi:N (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6104 3uoi:O (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6105 3uoi:P (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6106 3uoi:Q (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6107 3uoi:R (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6108 3uoi:S (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6109 3uoi:T (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6110 3uoi:U (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6111 3uoi:V (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6112 3uoi:W (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6113 3uoi:X (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6114 3uoi:a (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6115 3uoi:b (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6116 3uoi:c (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6117 3uoi:d (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6118 3uoi:e (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6119 3uoi:f (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6120 3uoi:g (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6121 3uoi:h (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6122 3uoi:i (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6123 3uoi:j (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6124 3uoi:k (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6125 3uoi:l (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6126 3uoi:m (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6127 3uoi:n (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6128 3uoi:o (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6129 3uoi:p (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6130 3uoi:q (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6131 3uoi:r (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6132 3uoi:s (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6133 3uoi:t (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6134 3uoi:u (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6135 3uoi:v (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6136 3uoi:w (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6137 3uoi:x (1.9) BS01 HEM 1.16.3.1 GO:0004322 ... P9WPQ9 N/A
    6138 3ut2:A (1.549) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 22822072
    6139 3ut2:B (1.549) BS01 HEM 1.11.1.21 GO:0004096 ... A4QUT2 22822072
    6140 3uw8:A (2.35) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6141 3uw8:B (2.35) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6142 3v6q:A (2.0) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 22886082
    6143 3v8d:A (1.9) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    6144 3v8d:B (1.9) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    6145 3vec:A (2.6) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6146 3vec:B (2.6) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6147 3vec:C (2.6) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6148 3ved:A (2.5) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6149 3ved:B (2.5) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6150 3ved:C (2.5) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6151 3vee:A (2.4) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6152 3vee:B (2.4) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6153 3vee:C (2.4) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6154 3vef:A (2.64) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6155 3vef:B (2.64) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6156 3vef:C (2.64) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6157 3veg:A (2.35) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6158 3veg:B (2.35) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6159 3veg:C (2.35) BS01 HEM 1.11.1.- GO:0004601 ... Q0SE24 22308037
    6160 3vhb:A (2.1) BS01 HEM ? GO:0005344 ... P04252 10448042
    6161 3vhb:B (2.1) BS01 HEM ? GO:0005344 ... P04252 10448042
    6162 3vlh:A (1.73) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6163 3vlh:B (1.73) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6164 3vli:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6165 3vli:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6166 3vlj:A (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6167 3vlj:B (1.7) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6168 3vlk:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6169 3vlk:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6170 3vll:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6171 3vll:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6172 3vlm:A (2.33) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6173 3vlm:B (2.33) BS01 HEM 1.11.1.21 GO:0004096 ... O59651 N/A
    6174 3vm4:A (1.94) BS01 HEM 1.11.2.4 GO:0004497 ... O24782 22700535
    6175 3vm9:A (1.05) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 22885714
    6176 3vm9:A (1.05) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 22885714
    6177 3vm9:B (1.05) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 22885714
    6178 3vm9:B (1.05) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 22885714
    6179 3vno:A (2.17) BS01 HEM 1.11.2.4 GO:0004497 ... O24782 N/A
    6180 3vnw:A (1.97) BS01 HEM ? GO:0009055 ... P04164 23319660
    6181 3vol:A (2.399) BS01 HEM ? GO:0007165 ... Q9I6V6 22622145
    6182 3voo:A (2.34) BS01 HEM 1.11.2.4 GO:0004497 ... O24782 N/A
    6183 3vp5:A (1.9) BS01 HEM ? GO:0003677 ... Q9CHR1 22798069
    6184 3vr8:C (2.81) BS01 HEM ? GO:0005515 ... P92506 22577165
    6185 3vr8:D (2.81) BS01 HEM ? GO:0005515 ... P92507 22577165
    6186 3vr8:G (2.81) BS01 HEM ? GO:0005515 ... P92506 22577165
    6187 3vr8:H (2.81) BS01 HEM ? GO:0005515 ... P92507 22577165
    6188 3vr9:C (3.01) BS01 HEM ? GO:0005515 ... P92506 N/A
    6189 3vr9:D (3.01) BS01 HEM ? GO:0005515 ... P92507 N/A
    6190 3vr9:G (3.01) BS02 HEM ? GO:0005515 ... P92506 N/A
    6191 3vr9:H (3.01) BS02 HEM ? GO:0005515 ... P92507 N/A
    6192 3vra:C (3.44) BS01 HEM ? GO:0005515 ... P92506 N/A
    6193 3vra:D (3.44) BS01 HEM ? GO:0005515 ... P92507 N/A
    6194 3vra:G (3.44) BS01 HEM ? GO:0005515 ... P92506 N/A
    6195 3vra:H (3.44) BS01 HEM ? GO:0005515 ... P92507 N/A
    6196 3vrb:C (2.91) BS01 HEM ? GO:0005515 ... P92506 22577165
    6197 3vrb:D (2.91) BS01 HEM ? GO:0005515 ... P92507 22577165
    6198 3vrb:G (2.91) BS02 HEM ? GO:0005515 ... P92506 22577165
    6199 3vrb:H (2.91) BS02 HEM ? GO:0005515 ... P92507 22577165
    6200 3vre:A (2.2) BS01 HEM ? GO:0004601 ... D3U1H8 23090393

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218