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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 3s66:A (1.401) BS01 HEM ? GO:0004601 ... P69905 N/A
    5802 3s66:B (1.401) BS01 HEM ? GO:0004601 ... P68871 N/A
    5803 3s79:A (2.75) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 22951074
    5804 3s7s:A (3.21) BS01 HEM 1.14.14.14 GO:0002677 ... P11511 22951074
    5805 3s8f:A (1.8) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 21814577
    5806 3s8g:A (1.8) BS01 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 21814577
    5807 3sdh:A (1.4) BS01 HEM ? GO:0001666 ... P02213 8289287
    5808 3sdh:A (1.4) BS03 HEM ? GO:0001666 ... P02213 8289287
    5809 3sdh:B (1.4) BS01 HEM ? GO:0001666 ... P02213 8289287
    5810 3sdh:B (1.4) BS02 HEM ? GO:0001666 ... P02213 8289287
    5811 3sdn:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 21800850
    5812 3sfd:C (2.61) BS01 HEM ? GO:0006099 ... D0VWV4 21822798
    5813 3sfd:D (2.61) BS01 HEM ? GO:0005740 ... A5GZW8 21822798
    5814 3sfe:C (2.81) BS01 HEM ? GO:0006099 ... D0VWV4 21822798
    5815 3sfe:D (2.81) BS01 HEM ? GO:0005740 ... A5GZW8 21822798
    5816 3sik:A (2.149) BS01 HEM ? GO:0046872 ... A0A6L8PY92 22412371
    5817 3sik:B (2.149) BS01 HEM ? GO:0046872 ... A0A6L8PY92 22412371
    5818 3sj5:A (1.673) BS01 HEM ? GO:0020037 ... Q8RBX6 21721586
    5819 3sj5:B (1.673) BS01 HEM ? GO:0020037 ... Q8RBX6 21721586
    5820 3sn5:A (2.75) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    5821 3sn5:B (2.75) BS01 HEM 1.14.14.23
    1.14.14.26
    GO:0004497 ... P22680 N/A
    5822 3svp:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5823 3svp:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5824 3svq:A (2.18) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5825 3svq:B (2.18) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 21809851
    5826 3swj:A (2.409) BS01 HEM N/A N/A N/A 22020097
    5827 3swj:A (2.409) BS03 HEM N/A N/A N/A 22020097
    5828 3swz:A (2.4) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 22266943
    5829 3swz:B (2.4) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 22266943
    5830 3swz:C (2.4) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 22266943
    5831 3swz:D (2.4) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 22266943
    5832 3sxv:A (2.1) BS01 HEM 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    5833 3szk:A (3.01) BS01 HEM ? GO:0004601 ... P69905 21917915
    5834 3szk:B (3.01) BS01 HEM ? GO:0004601 ... P68871 21917915
    5835 3szk:D (3.01) BS01 HEM ? GO:0004601 ... P69905 21917915
    5836 3szk:E (3.01) BS01 HEM ? GO:0004601 ... P68871 21917915
    5837 3t3q:A (2.1) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5838 3t3q:B (2.1) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5839 3t3q:C (2.1) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5840 3t3q:D (2.1) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5841 3t3r:A (2.4) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5842 3t3r:B (2.4) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5843 3t3r:C (2.4) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5844 3t3r:D (2.4) BS01 HEM 1.14.14.- GO:0004497 ... P11509 22051186
    5845 3t3s:A (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5846 3t3s:B (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5847 3t3s:C (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5848 3t3s:D (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5849 3t3s:E (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5850 3t3s:F (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5851 3t3s:G (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5852 3t3s:H (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... Q16696 22051186
    5853 3t3z:A (2.35) BS01 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 22051186
    5854 3t3z:B (2.35) BS02 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 22051186
    5855 3t3z:C (2.35) BS01 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 22051186
    5856 3t3z:D (2.35) BS02 HEM 1.14.13.n7
    1.14.14.1
    GO:0001676 ... P05181 22051186
    5857 3tbg:A (2.1) BS05 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5858 3tbg:B (2.1) BS04 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5859 3tbg:C (2.1) BS05 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5860 3tbg:D (2.1) BS04 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5861 3tda:A (2.67) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5862 3tda:B (2.67) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5863 3tda:C (2.67) BS02 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5864 3tda:D (2.67) BS01 HEM 1.14.14.- GO:0004497 ... P10635 25555909
    5865 3tf0:A (1.743) BS01 HEM ? GO:0020037 ... Q8RBX6 21997213
    5866 3tf0:B (1.743) BS01 HEM ? GO:0020037 ... Q8RBX6 21997213
    5867 3tf1:A (2.0369) BS01 HEM ? GO:0020037 ... Q8RBX6 21997213
    5868 3tf1:B (2.0369) BS01 HEM ? GO:0020037 ... Q8RBX6 21997213
    5869 3tf8:A (2.1302) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5870 3tf8:B (2.1302) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5871 3tf9:A (2.5901) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5872 3tf9:B (2.5901) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5873 3tfa:A (2.2711) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5874 3tfa:B (2.2711) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5875 3tfd:A (1.96) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5876 3tfd:B (1.96) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5877 3tfe:A (1.991) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5878 3tfe:B (1.991) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5879 3tff:A (1.9401) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5880 3tff:B (1.9401) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5881 3tfg:A (1.9003) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5882 3tfg:B (1.9003) BS01 HEM ? GO:0020037 ... Q8YUQ7 21997213
    5883 3tga:A (1.3) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 22334402
    5884 3tgb:A (1.35) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 22334402
    5885 3tgc:A (1.4) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 22976968
    5886 3tgm:A (2.85) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 22276118
    5887 3tgm:B (2.85) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 22276118
    5888 3tgu:C (2.7) BS01 HEM ? GO:0005737 ... P18946 22690928
    5889 3tgu:C (2.7) BS02 HEM ? GO:0005737 ... P18946 22690928
    5890 3tgu:P (2.7) BS01 HEM ? GO:0005737 ... P18946 22690928
    5891 3tgu:P (2.7) BS02 HEM ? GO:0005737 ... P18946 22690928
    5892 3tgy:A (2.35) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 27986533
    5893 3tik:A (2.05) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22777048
    5894 3tik:B (2.05) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22777048
    5895 3tik:C (2.05) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22777048
    5896 3tik:D (2.05) BS01 HEM 1.14.13.70 GO:0004497 ... Q385E8 22777048
    5897 3tjs:A (2.25) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 22410611
    5898 3tk3:A (2.8001) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 22051155
    5899 3tk3:B (2.8001) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 22051155
    5900 3tk3:C (2.8001) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 22051155
    5901 3tk3:D (2.8001) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 22051155
    5902 3tkt:A (2.2) BS01 HEM ? GO:0004497 ... Q2G3H6 22349230
    5903 3tld:A (1.896) BS01 HEM ? GO:0005344 ... P04252 23519792
    5904 3tld:B (1.896) BS01 HEM ? GO:0005344 ... P04252 23519792
    5905 3tm3:A (1.75) BS01 HEM ? GO:0005344 ... P04252 23519792
    5906 3tm9:A (1.72) BS01 HEM ? GO:0005344 ... P04252 23519792
    5907 3tmz:A (2.248) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 22909231
    5908 3tol:A (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5909 3tol:B (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5910 3tol:C (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5911 3tol:D (2.0) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5912 3tom:A (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5913 3tom:B (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5914 3tom:C (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5915 3tom:D (2.3) BS01 HEM ? GO:0005506 ... P0ABE7 22522257
    5916 3ttt:A (1.58) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5917 3ttt:B (1.58) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5918 3ttt:C (1.58) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5919 3ttt:D (1.58) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5920 3ttu:A (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5921 3ttu:B (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5922 3ttu:C (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5923 3ttu:D (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5924 3ttv:A (1.45) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5925 3ttv:B (1.45) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5926 3ttv:C (1.45) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5927 3ttv:D (1.45) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5928 3ttw:A (1.62) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5929 3ttw:B (1.62) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5930 3ttw:C (1.62) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5931 3ttw:D (1.62) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5932 3ttx:A (1.74) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5933 3ttx:B (1.74) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5934 3ttx:C (1.74) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5935 3ttx:D (1.74) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 22172685
    5936 3tyi:A (1.399) BS01 HEM ? GO:0005515 ... P00044 22717436
    5937 3tyi:B (1.399) BS01 HEM ? GO:0005515 ... P00044 22717436
    5938 3tyl:A (1.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5939 3tyl:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5940 3tym:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5941 3tym:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5942 3tyn:A (1.968) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5943 3tyn:B (1.968) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5944 3tyo:A (1.927) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5945 3tyo:B (1.927) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22370337
    5946 3tyw:A (2.9) BS01 HEM ? GO:0004497 ... Q9EWP1 N/A
    5947 3tyw:B (2.9) BS01 HEM ? GO:0004497 ... Q9EWP1 N/A
    5948 3tyw:C (2.9) BS01 HEM ? GO:0004497 ... Q9EWP1 N/A
    5949 3tyw:D (2.9) BS01 HEM ? GO:0004497 ... Q9EWP1 N/A
    5950 3tzo:A (1.76) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 22203090
    5951 3tzo:B (1.76) BS01 HEM 1.14.19.69 GO:0004497 ... Q9FCA6 22203090
    5952 3u3e:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 23192025
    5953 3u8p:A (2.75) BS01 HEM ? GO:0005506 ... P0ABE7
    P42212
    22822710
    5954 3u8p:B (2.75) BS01 HEM ? GO:0005506 ... P0ABE7
    P42212
    22822710
    5955 3u8p:C (2.75) BS01 HEM ? GO:0005506 ... P0ABE7
    P42212
    22822710
    5956 3ua1:A (2.15) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 22157006
    5957 3ua5:A (2.8) BS01 HEM 1.14.13.- GO:0004497 ... P20813 22909231
    5958 3ua5:B (2.8) BS01 HEM 1.14.13.- GO:0004497 ... P20813 22909231
    5959 3uas:A (2.939) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 23276288
    5960 3uba:A (2.65) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    5961 3ubc:A (1.65) BS01 HEM ? GO:0001666 ... B3DUZ7 22415930
    5962 3ubc:D (1.65) BS01 HEM ? GO:0001666 ... B3DUZ7 22415930
    5963 3ubc:G (1.65) BS01 HEM ? GO:0001666 ... B3DUZ7 22415930
    5964 3ubv:A (3.2) BS01 HEM ? GO:0001666 ... B3DUZ7 22415930
    5965 3ubv:D (3.2) BS01 HEM ? GO:0001666 ... B3DUZ7 22415930
    5966 3ubv:G (3.2) BS01 HEM ? GO:0001666 ... B3DUZ7 22415930
    5967 3ufo:A (2.169) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5968 3ufo:B (2.169) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5969 3ufp:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5970 3ufp:B (2.1) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5971 3ufq:A (2.058) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5972 3ufq:B (2.058) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5973 3ufr:A (2.097) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5974 3ufr:B (2.097) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5975 3ufs:A (1.971) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5976 3ufs:B (1.971) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5977 3uft:A (2.078) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5978 3uft:B (2.078) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5979 3ufu:A (1.886) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5980 3ufu:B (1.886) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5981 3ufv:A (2.078) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5982 3ufv:B (2.078) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5983 3ufw:A (2.0) BS01 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5984 3ufw:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 22731813
    5985 3ugy:A (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    5986 3ugy:A (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006
    5987 3ugy:B (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    5988 3ugy:B (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006
    5989 3ugz:A (1.65) BS01 HEM ? GO:0001666 ... P02213 22171006
    5990 3ugz:A (1.65) BS02 HEM ? GO:0001666 ... P02213 22171006
    5991 3ugz:B (1.65) BS01 HEM ? GO:0001666 ... P02213 22171006
    5992 3ugz:B (1.65) BS02 HEM ? GO:0001666 ... P02213 22171006
    5993 3uh3:A (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    5994 3uh3:A (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    5995 3uh3:B (1.8) BS01 HEM ? GO:0001666 ... P02213 22171006
    5996 3uh3:B (1.8) BS02 HEM ? GO:0001666 ... P02213 22171006
    5997 3uh5:A (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    5998 3uh5:A (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006
    5999 3uh5:B (2.1) BS01 HEM ? GO:0001666 ... P02213 22171006
    6000 3uh5:B (2.1) BS02 HEM ? GO:0001666 ... P02213 22171006

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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