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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1d7w:C (1.9) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    402 1d7w:D (1.9) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    403 1d8u:A (2.35) BS01 HEM 1.7.2.- GO:0005634 ... O04986 10986467
    404 1d8u:B (2.35) BS01 HEM 1.7.2.- GO:0005634 ... O04986 10986467
    405 1dcc:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7664080
    406 1dd7:A (2.25) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 10677491
    407 1df1:A (2.35) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 10562539
    408 1df1:B (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10562539
    409 1dgb:A (2.2) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    410 1dgb:B (2.2) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    411 1dgb:C (2.2) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    412 1dgb:D (2.2) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    413 1dgf:A (1.5) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    414 1dgf:B (1.5) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    415 1dgf:C (1.5) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    416 1dgf:D (1.5) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    417 1dgg:A (1.8) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    418 1dgg:B (1.8) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    419 1dgg:C (1.8) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    420 1dgg:D (1.8) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    421 1dgh:A (2.0) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    422 1dgh:B (2.0) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    423 1dgh:C (2.0) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    424 1dgh:D (2.0) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10656833
    425 1dj1:A (1.93) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 10722697
    426 1dj5:A (1.93) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 10722697
    427 1dk0:A (1.77) BS01 HEM ? GO:0005515 ... Q54450 10966573
    428 1dk0:B (1.77) BS01 HEM ? GO:0005515 ... Q54450 10966573
    429 1dke:A (2.1) BS01 HEM ? GO:0004601 ... P69905 10794410
    430 1dke:B (2.1) BS01 HEM ? GO:0004601 ... P68871 10794410
    431 1dke:C (2.1) BS01 HEM ? GO:0004601 ... P69905 10794410
    432 1dke:D (2.1) BS01 HEM ? GO:0004601 ... P68871 10794410
    433 1dkh:A (3.2) BS01 HEM ? GO:0005515 ... Q54450 10966573
    434 1dlw:A (1.54) BS01 HEM ? GO:0005344 ... P15160 10835341
    435 1dly:A (1.8) BS01 HEM ? GO:0005344 ... Q08753 10835341
    436 1dm1:A (1.99) BS01 HEM ? GO:0005344 ... P02210 10694477
    437 1dm6:A (1.95) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    438 1dm6:B (1.95) BS04 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    439 1dm7:A (2.1) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    440 1dm7:B (2.1) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    441 1dm8:A (2.25) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    442 1dm8:B (2.25) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    443 1dmi:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    444 1dmi:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 N/A
    445 1dmj:A (2.35) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    446 1dmj:B (2.35) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    447 1dmk:A (1.9) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    448 1dmk:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11590164
    449 1dnu:A (1.85) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    450 1dnu:B (1.85) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    451 1dnu:C (1.85) BS05 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    452 1dnu:D (1.85) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    453 1dnw:A (1.9) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    454 1dnw:B (1.9) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    455 1dnw:C (1.9) BS06 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    456 1dnw:D (1.9) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    457 1do1:A (1.5) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    458 1do3:A (1.55) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    459 1do4:A (1.7) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    460 1do7:A (1.85) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10724176
    461 1do9:A (-1.00) BS01 HEM ? GO:0020037 ... P00169 10651812
    462 1dp6:A (2.3) BS02 HEM 2.7.13.3 GO:0006355 ... P23222 10747783
    463 1dp8:A (2.5) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 10747783
    464 1dp9:A (2.6) BS02 HEM 2.7.13.3 GO:0006355 ... P23222 10747783
    465 1drm:A (2.4) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 9860942
    466 1ds4:A (2.02) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11170452
    467 1dse:A (2.0) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 11170452
    468 1dsg:A (2.56) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11170452
    469 1dso:A (2.03) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11170452
    470 1dsp:A (2.03) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11170452
    471 1dt6:A (3.0) BS01 HEM 1.14.14.1 GO:0004497 ... P00179 10678174
    472 1dti:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    473 1dtm:A (2.13) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10813811
    474 1duk:A (2.13) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10813811
    475 1duo:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10813811
    476 1dve:A (2.4) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 10760513
    477 1dvg:A (2.2) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 10760513
    478 1dvg:B (2.2) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 10760513
    479 1dvv:A (-1.00) BS01 HEM ? GO:0005506 ... P00099 10918067
    480 1dw2:A (2.2) BS01 HEM ? GO:0009055 ... P81238 10821858
    481 1dw2:B (2.2) BS01 HEM ? GO:0009055 ... P81238 10821858
    482 1dw2:C (2.2) BS01 HEM ? GO:0009055 ... P81238 10821858
    483 1dwr:A (1.45) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 10706294
    484 1dws:A (1.45) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 10706294
    485 1dwt:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 10706294
    486 1dwv:A (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10769116
    487 1dwv:B (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10769116
    488 1dww:A (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10769116
    489 1dww:B (2.35) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10769116
    490 1dwx:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10769116
    491 1dwx:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 10769116
    492 1dxc:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10681426
    493 1dxd:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10681426
    494 1dxt:A (1.7) BS01 HEM ? GO:0004601 ... P69905 1390648
    495 1dxt:B (1.7) BS01 HEM ? GO:0004601 ... P68871 1390648
    496 1dxt:C (1.7) BS01 HEM ? GO:0004601 ... P69905 1390648
    497 1dxt:D (1.7) BS01 HEM ? GO:0004601 ... P68871 1390648
    498 1dxu:A (1.7) BS01 HEM ? GO:0004601 ... P69905 1390648
    499 1dxu:B (1.7) BS01 HEM ? GO:0004601 ... P68871 1390648
    500 1dxu:C (1.7) BS01 HEM ? GO:0004601 ... P69905 1390648
    501 1dxu:D (1.7) BS01 HEM ? GO:0004601 ... P68871 1390648
    502 1dxv:A (1.7) BS01 HEM ? GO:0004601 ... P69905 1390648
    503 1dxv:B (1.7) BS01 HEM ? GO:0004601 ... P68871 1390648
    504 1dxv:C (1.7) BS01 HEM ? GO:0004601 ... P69905 1390648
    505 1dxv:D (1.7) BS01 HEM ? GO:0004601 ... P68871 1390648
    506 1dz4:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    507 1dz4:B (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    508 1dz6:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    509 1dz6:B (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    510 1dz8:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    511 1dz8:B (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    512 1dz9:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    513 1dz9:B (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 10698731
    514 1e7p:C (3.1) BS01 HEM ? GO:0005886 ... P17413 11248702
    515 1e7p:C (3.1) BS02 HEM ? GO:0005886 ... P17413 11248702
    516 1e7p:F (3.1) BS01 HEM ? GO:0005886 ... P17413 11248702
    517 1e7p:F (3.1) BS02 HEM ? GO:0005886 ... P17413 11248702
    518 1e7p:I (3.1) BS01 HEM ? GO:0005886 ... P17413 11248702
    519 1e7p:I (3.1) BS02 HEM ? GO:0005886 ... P17413 11248702
    520 1e7p:L (3.1) BS01 HEM ? GO:0005886 ... P17413 11248702
    521 1e7p:L (3.1) BS02 HEM ? GO:0005886 ... P17413 11248702
    522 1e93:A (2.0) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 12486720
    523 1e9x:A (2.1) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 11248033
    524 1ea1:A (2.21) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 11248033
    525 1ebc:A (1.8) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10423453
    526 1ebe:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8069633
    527 1ebt:A (1.9) BS02 HEM ? GO:0005576 ... P41260 10423453
    528 1ebv:A (3.2) BS02 HEM 1.14.99.1 GO:0001516 ... P05979 11723249
    529 1eca:A (1.4) BS01 HEM ? GO:0005344 ... P02229 430568
    530 1ecd:A (1.4) BS01 HEM ? GO:0005344 ... P02229 430568
    531 1ecn:A (1.4) BS01 HEM ? GO:0005344 ... P02229 430568
    532 1eco:A (1.4) BS01 HEM ? GO:0005344 ... P02229 430568
    533 1ed4:A (1.86) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    534 1ed4:B (1.86) BS04 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    535 1ed5:A (1.8) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    536 1ed5:B (1.8) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    537 1ed6:A (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    538 1ed6:B (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331003
    539 1egy:A (2.35) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 10716705
    540 1ehb:A (1.9) BS01 HEM ? GO:0020037 ... P00171 10842340
    541 1ehe:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    542 1ehf:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    543 1ehg:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    544 1ehk:A (2.4) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    545 1emy:A (1.78) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02186 7657658
    546 1eqg:A (2.61) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 11318639
    547 1eqg:B (2.61) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 11318639
    548 1eqh:A (2.7) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 11318639
    549 1eqh:B (2.7) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 11318639
    550 1es1:A (2.1) BS01 HEM ? GO:0020037 ... P00171 10842340
    551 1etp:A (2.2) BS01 HEM ? GO:0005506 ... Q52369 9032080
    552 1etp:A (2.2) BS02 HEM ? GO:0005506 ... Q52369 9032080
    553 1etp:B (2.2) BS01 HEM ? GO:0005506 ... Q52369 9032080
    554 1etp:B (2.2) BS02 HEM ? GO:0005506 ... Q52369 9032080
    555 1eue:A (1.8) BS01 HEM ? GO:0020037 ... P04166 11197480
    556 1eue:B (1.8) BS01 HEM ? GO:0020037 ... P04166 11197480
    557 1euo:A (2.0) BS01 HEM ? GO:0005576 ... Q26241 10884386
    558 1eup:A (2.1) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 10716705
    559 1ew0:A (1.4) BS01 HEM 2.7.13.3 GO:0006355 ... P10955 10926518
    560 1ew6:A (1.78) BS01 HEM ? GO:0004601 ... Q9NAV8 10751397
    561 1ew6:B (1.78) BS01 HEM ? GO:0004601 ... Q9NAV8 10751397
    562 1ewa:A (2.5) BS01 HEM ? GO:0004601 ... Q9NAV8 10751397
    563 1ewa:B (2.5) BS01 HEM ? GO:0004601 ... Q9NAV8 10751397
    564 1eys:C (2.2) BS01 HEM N/A GO:0005506 ... N/A 11095707
    565 1eys:C (2.2) BS02 HEM N/A GO:0005506 ... N/A 11095707
    566 1eys:C (2.2) BS03 HEM N/A GO:0005506 ... N/A 11095707
    567 1eys:C (2.2) BS04 HEM N/A GO:0005506 ... N/A 11095707
    568 1ezv:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 10873857
    569 1ezv:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 10873857
    570 1ezv:D (2.3) BS01 HEM 7.1.1.8 GO:0009055 ... P07143 10873857
    571 1f03:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 11248680
    572 1f04:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 11248680
    573 1f24:A (1.4) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11132616
    574 1f25:A (1.4) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11132616
    575 1f26:A (1.4) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11132616
    576 1f4j:A (2.4) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 11134921
    577 1f4j:B (2.4) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 11134921
    578 1f4j:C (2.4) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 11134921
    579 1f4j:D (2.4) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 11134921
    580 1f4t:A (1.93) BS02 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    581 1f4t:B (1.93) BS02 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    582 1f4u:A (2.69) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    583 1f4u:B (2.69) BS01 HEM 1.11.1.7
    1.14.-.-
    GO:0004497 ... Q55080 10859321
    584 1f5o:A (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    585 1f5o:B (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    586 1f5o:C (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    587 1f5o:D (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    588 1f5o:E (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    589 1f5o:F (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    590 1f5p:A (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    591 1f5p:B (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    592 1f5p:C (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    593 1f5p:D (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    594 1f5p:E (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    595 1f5p:F (2.9) BS01 HEM ? GO:0005344 ... P02208 11340069
    596 1f63:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10049310
    597 1f65:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10049310
    598 1f6h:A (3.31) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    599 1fag:A (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595
    600 1fag:B (2.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 9033595

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218