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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 2yyw:A (1.33) BS04 HEM ? GO:0009055 ... P00132 N/A
    3802 2yyx:A (1.0) BS01 HEM ? GO:0009055 ... P00132 N/A
    3803 2yyx:A (1.0) BS02 HEM ? GO:0009055 ... P00132 N/A
    3804 2yyx:A (1.0) BS03 HEM ? GO:0009055 ... P00132 N/A
    3805 2yyx:A (1.0) BS04 HEM ? GO:0009055 ... P00132 N/A
    3806 2z36:A (2.8) BS02 HEM 1.-.-.- GO:0004497 ... Q2L6S8 17679139
    3807 2z36:B (2.8) BS02 HEM 1.-.-.- GO:0004497 ... Q2L6S8 17679139
    3808 2z3t:A (1.9) BS01 HEM 1.-.-.- GO:0004497 ... Q83WG3 17606921
    3809 2z3t:B (1.9) BS01 HEM 1.-.-.- GO:0004497 ... Q83WG3 17606921
    3810 2z3t:C (1.9) BS01 HEM 1.-.-.- GO:0004497 ... Q83WG3 17606921
    3811 2z3t:D (1.9) BS01 HEM 1.-.-.- GO:0004497 ... Q83WG3 17606921
    3812 2z3u:A (2.4) BS01 HEM 1.-.-.- GO:0004497 ... Q83WG3 17606921
    3813 2z5z:A (3.5) BS02 HEM 1.11.1.7 GO:0004601 ... A5JUY8 N/A
    3814 2z6f:A (1.9) BS01 HEM ? N/A Q931P4 18667422
    3815 2z6n:A (1.86) BS01 HEM ? GO:0004601 ... P83134 N/A
    3816 2z6n:B (1.86) BS01 HEM ? GO:0004601 ... P83133 N/A
    3817 2z6s:A (1.25) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17929929
    3818 2z6t:A (1.2) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17929929
    3819 2z85:A (1.6) BS01 HEM ? GO:0001666 ... P02213 18001141
    3820 2z85:A (1.6) BS02 HEM ? GO:0001666 ... P02213 18001141
    3821 2z85:B (1.6) BS01 HEM ? GO:0001666 ... P02213 18001141
    3822 2z85:B (1.6) BS02 HEM ? GO:0001666 ... P02213 18001141
    3823 2z8a:A (1.06) BS01 HEM ? GO:0001666 ... P02213 18001141
    3824 2z8a:A (1.06) BS02 HEM ? GO:0001666 ... P02213 18001141
    3825 2z8a:B (1.06) BS01 HEM ? GO:0001666 ... P02213 18001141
    3826 2zax:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 18088124
    3827 2zbo:A (1.6) BS01 HEM ? GO:0005506 ... Q76FN8 18678931
    3828 2zbo:C (1.6) BS01 HEM ? GO:0005506 ... Q76FN8 18678931
    3829 2zbo:E (1.6) BS01 HEM ? GO:0005506 ... Q76FN8 18678931
    3830 2zbo:G (1.6) BS01 HEM ? GO:0005506 ... Q76FN8 18678931
    3831 2zbo:I (1.6) BS01 HEM ? GO:0005506 ... Q76FN8 18678931
    3832 2zbo:K (1.6) BS01 HEM ? GO:0005506 ... Q76FN8 18678931
    3833 2zbx:A (1.5) BS01 HEM 1.14.15.22 GO:0004497 ... P18326 18314962
    3834 2zby:A (1.6) BS01 HEM 1.14.15.22 GO:0004497 ... P18326 18314962
    3835 2zbz:A (1.9) BS01 HEM 1.14.15.22 GO:0004497 ... P18326 18314962
    3836 2zdo:A (1.8) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A649 18713745
    3837 2zdo:B (1.8) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A649 18713745
    3838 2zdo:C (1.8) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A649 18713745
    3839 2zdo:D (1.8) BS01 HEM 1.14.99.48 GO:0004392 ... Q7A649 18713745
    3840 2zfb:A (3.0) BS01 HEM ? GO:0004601 ... P19831 N/A
    3841 2zfb:B (3.0) BS01 HEM ? GO:0004601 ... P21668 N/A
    3842 2zfo:A (1.95) BS01 HEM ? GO:0001666 ... Q7M419 18398907
    3843 2zfo:A (1.95) BS03 HEM ? GO:0001666 ... Q7M419 18398907
    3844 2zfo:B (1.95) BS01 HEM ? GO:0005344 ... Q7M413 18398907
    3845 2zfo:C (1.95) BS01 HEM ? GO:0001666 ... Q7M418 18398907
    3846 2zfo:D (1.95) BS01 HEM ? GO:0005344 ... Q5KSB7 18398907
    3847 2zlt:A (1.9) BS01 HEM ? GO:0004601 ... P01958 18540052
    3848 2zlt:B (1.9) BS01 HEM ? GO:0004601 ... P02062 18540052
    3849 2zlu:A (2.0) BS01 HEM ? GO:0004601 ... P01958 18540052
    3850 2zlu:B (2.0) BS01 HEM ? GO:0004601 ... P02062 18540052
    3851 2zlv:A (2.0) BS01 HEM ? GO:0004601 ... P01958 18540052
    3852 2zlv:B (2.0) BS01 HEM ? GO:0004601 ... P02062 18540052
    3853 2zlw:A (2.9) BS01 HEM ? GO:0004601 ... P01958 18540052
    3854 2zlw:B (2.9) BS01 HEM ? GO:0004601 ... P02062 18540052
    3855 2zlw:C (2.9) BS01 HEM ? GO:0004601 ... P01958 18540052
    3856 2zlw:D (2.9) BS01 HEM ? GO:0004601 ... P02062 18540052
    3857 2zlx:A (2.8) BS01 HEM ? GO:0004601 ... P01958 18540052
    3858 2zlx:B (2.8) BS01 HEM ? GO:0004601 ... P02062 18540052
    3859 2zlx:C (2.8) BS01 HEM ? GO:0004601 ... P01958 18540052
    3860 2zlx:D (2.8) BS01 HEM ? GO:0004601 ... P02062 18540052
    3861 2zon:G (1.7) BS01 HEM ? GO:0005506 ... D0VWQ8 19890332
    3862 2zoo:A (1.95) BS03 HEM 1.7.2.1 GO:0005507 ... Q3IGF7 N/A
    3863 2zqj:A (2.9) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 20697922
    3864 2zqj:B (2.9) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 20697922
    3865 2zqj:C (2.9) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 20697922
    3866 2zqx:A (2.37) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 20697922
    3867 2zqx:B (2.37) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 20697922
    3868 2zqx:C (2.37) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 20697922
    3869 2zs0:A (1.6) BS01 HEM ? GO:0001666 ... Q7M419 18834142
    3870 2zs0:A (1.6) BS03 HEM ? GO:0001666 ... Q7M419 18834142
    3871 2zs0:B (1.6) BS01 HEM ? GO:0005344 ... Q7M413 18834142
    3872 2zs0:C (1.6) BS01 HEM ? GO:0001666 ... Q7M418 18834142
    3873 2zs0:C (1.6) BS02 HEM ? GO:0001666 ... Q7M418 18834142
    3874 2zs0:D (1.6) BS01 HEM ? GO:0005344 ... Q5KSB7 18834142
    3875 2zs1:A (1.7) BS01 HEM ? GO:0001666 ... Q7M419 18834142
    3876 2zs1:A (1.7) BS03 HEM ? GO:0001666 ... Q7M419 18834142
    3877 2zs1:B (1.7) BS01 HEM ? GO:0005344 ... Q7M413 18834142
    3878 2zs1:C (1.7) BS01 HEM ? GO:0001666 ... Q7M418 18834142
    3879 2zs1:D (1.7) BS01 HEM ? GO:0005344 ... Q5KSB7 18834142
    3880 2zsn:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3881 2zso:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3882 2zsp:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3883 2zsq:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3884 2zsr:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3885 2zss:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3886 2zst:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3887 2zsx:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3888 2zsy:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3889 2zsz:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3890 2zt0:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3891 2zt1:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3892 2zt2:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3893 2zt3:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3894 2zt4:A (1.21) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 19204297
    3895 2zt9:A (3.0) BS02 HEM ? GO:0009055 ... P0A384 19189962
    3896 2zt9:A (3.0) BS03 HEM ? GO:0009055 ... P0A384 19189962
    3897 2zt9:A (3.0) BS04 HEM ? GO:0009055 ... P0A384 19189962
    3898 2zt9:C (3.0) BS02 HEM ? GO:0005506 ... Q93SW9 19189962
    3899 2zuh:A (1.55) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    3900 2zui:A (1.5) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    3901 2zuj:A (1.6) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    3902 2zwj:A (1.81) BS01 HEM ? GO:0005344 ... Q7M422 20179337
    3903 2zwt:A (1.35) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19193991
    3904 2zwu:A (1.3) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 19193991
    3905 351c:A (1.6) BS01 HEM ? GO:0005506 ... P00099 6283101
    3906 3a0b:E (3.7) BS02 HEM ? GO:0005506 ... P12238 19433803
    3907 3a0b:F (3.7) BS01 HEM ? GO:0005506 ... P12239 19433803
    3908 3a0b:V (3.7) BS01 HEM ? GO:0005506 ... P0A387 19433803
    3909 3a0b:e (3.7) BS02 HEM ? GO:0005506 ... P12238 19433803
    3910 3a0b:f (3.7) BS01 HEM ? GO:0005506 ... P12239 19433803
    3911 3a0b:v (3.7) BS01 HEM ? GO:0005506 ... P0A387 19433803
    3912 3a0g:A (2.5) BS01 HEM ? GO:0004601 ... P01947 N/A
    3913 3a0g:B (2.5) BS01 HEM ? GO:0004601 ... P02095 N/A
    3914 3a0h:E (4.0) BS02 HEM ? GO:0005506 ... P12238 19433803
    3915 3a0h:F (4.0) BS01 HEM ? GO:0005506 ... P12239 19433803
    3916 3a0h:V (4.0) BS01 HEM ? GO:0005506 ... P0A387 19433803
    3917 3a0h:e (4.0) BS02 HEM ? GO:0005506 ... P12238 19433803
    3918 3a0h:f (4.0) BS01 HEM ? GO:0005506 ... P12239 19433803
    3919 3a0h:v (4.0) BS01 HEM ? GO:0005506 ... P0A387 19433803
    3920 3a15:A (1.79) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3921 3a15:B (1.79) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3922 3a15:C (1.79) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3923 3a15:D (1.79) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3924 3a16:A (1.6) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3925 3a16:B (1.6) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3926 3a16:C (1.6) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3927 3a16:D (1.6) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3928 3a17:A (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3929 3a17:B (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3930 3a17:C (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3931 3a17:D (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3932 3a17:E (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3933 3a17:F (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3934 3a17:G (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3935 3a17:H (2.5) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3936 3a18:A (1.8) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3937 3a18:B (1.8) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3938 3a18:C (1.8) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3939 3a18:D (1.8) BS01 HEM 4.8.1.2 GO:0016829 ... Q76K71 19740758
    3940 3a1l:A (2.5) BS01 HEM ? GO:0004497 ... Q83WG3 19385626
    3941 3a2g:A (1.75) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 20099839
    3942 3a4g:A (1.75) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3943 3a4h:A (3.06) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3944 3a4z:A (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3945 3a4z:B (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3946 3a4z:C (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3947 3a4z:D (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3948 3a4z:E (2.2) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3949 3a50:A (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3950 3a50:B (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3951 3a50:C (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3952 3a50:D (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3953 3a50:E (2.05) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3954 3a51:A (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3955 3a51:B (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3956 3a51:C (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3957 3a51:D (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3958 3a51:E (2.0) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 20667833
    3959 3a59:A (3.41) BS01 HEM ? GO:0004601 ... P01981 N/A
    3960 3a59:B (3.41) BS01 HEM ? GO:0004601 ... P02123 N/A
    3961 3a59:C (3.41) BS01 HEM ? GO:0004601 ... P01981 N/A
    3962 3a59:D (3.41) BS01 HEM ? GO:0004601 ... P02123 N/A
    3963 3a59:E (3.41) BS01 HEM ? GO:0004601 ... P01981 N/A
    3964 3a59:F (3.41) BS01 HEM ? GO:0004601 ... P02123 N/A
    3965 3a59:G (3.41) BS01 HEM ? GO:0004601 ... P01981 N/A
    3966 3a59:H (3.41) BS01 HEM ? GO:0004601 ... P02123 N/A
    3967 3a5a:A (1.83) BS01 HEM ? GO:0005344 ... Q7M422 20179337
    3968 3a5b:A (1.81) BS01 HEM ? GO:0005344 ... Q7M422 20179337
    3969 3a5g:A (1.81) BS01 HEM ? GO:0005344 ... Q7M422 20179337
    3970 3a9m:A (1.8) BS01 HEM ? GO:0005344 ... Q7M422 20179337
    3971 3aba:A (1.8) BS01 HEM 1.14.13.- GO:0004497 ... Q93H81 20375018
    3972 3abb:A (2.3) BS01 HEM 1.14.13.- GO:0004497 ... Q93H80 20375018
    3973 3abv:C (3.24) BS02 HEM ? GO:0006099 ... D0VWV4 26198225
    3974 3abv:D (3.24) BS01 HEM ? GO:0005740 ... A5GZW8 26198225
    3975 3ae1:C (3.139) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    3976 3ae1:D (3.139) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3977 3ae2:C (3.1) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    3978 3ae2:D (3.1) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3979 3ae3:C (3.35) BS02 HEM ? GO:0006099 ... D0VWV4 N/A
    3980 3ae3:D (3.35) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3981 3ae4:C (2.91) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    3982 3ae4:D (2.91) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3983 3ae5:C (3.41) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    3984 3ae5:D (3.41) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3985 3ae6:C (3.4) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    3986 3ae6:D (3.4) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3987 3ae7:C (3.62) BS02 HEM ? GO:0006099 ... D0VWV4 26198225
    3988 3ae7:D (3.62) BS01 HEM ? GO:0005740 ... A5GZW8 26198225
    3989 3ae8:C (3.4) BS02 HEM ? GO:0006099 ... D0VWV4 N/A
    3990 3ae8:D (3.4) BS02 HEM ? GO:0005740 ... A5GZW8 N/A
    3991 3ae9:C (3.31) BS01 HEM ? GO:0006099 ... D0VWV4 26198225
    3992 3ae9:D (3.31) BS01 HEM ? GO:0005740 ... A5GZW8 26198225
    3993 3aea:C (3.39) BS01 HEM ? GO:0006099 ... D0VWV4 26198225
    3994 3aea:D (3.39) BS01 HEM ? GO:0005740 ... A5GZW8 26198225
    3995 3aeb:C (3.0) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    3996 3aeb:D (3.0) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3997 3aec:C (3.61) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    3998 3aec:D (3.61) BS01 HEM ? GO:0005740 ... A5GZW8 N/A
    3999 3aed:C (3.52) BS01 HEM ? GO:0006099 ... D0VWV4 N/A
    4000 3aed:D (3.52) BS01 HEM ? GO:0005740 ... A5GZW8 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218