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BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1bfr:Q (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    202 1bfr:R (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    203 1bfr:S (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    204 1bfr:T (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    205 1bfr:U (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    206 1bfr:V (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    207 1bfr:W (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    208 1bfr:X (2.94) BS03 HEM 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    209 1bfx:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 10095768
    210 1bgp:A (1.9) BS03 HEM 1.11.1.7 GO:0004601 ... Q40069 9442067
    211 1bgy:C (3.0) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    212 1bgy:C (3.0) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    213 1bgy:O (3.0) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    214 1bgy:O (3.0) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 9651245
    215 1bij:A (2.3) BS01 HEM ? GO:0004601 ... P69905 10698631
    216 1bij:B (2.3) BS01 HEM ? GO:0004601 ... P68871 10698631
    217 1bij:C (2.3) BS01 HEM ? GO:0004601 ... P69905 10698631
    218 1bij:D (2.3) BS01 HEM ? GO:0004601 ... P68871 10698631
    219 1bin:A (2.2) BS02 HEM ? GO:0005344 ... P02238 9086279
    220 1bin:B (2.2) BS02 HEM ? GO:0005344 ... P02238 9086279
    221 1bje:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 9576852
    222 1blv:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9836603
    223 1bu7:A (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 10051560
    224 1bu7:B (1.65) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 10051560
    225 1buw:A (1.9) BS01 HEM ? GO:0004601 ... P69905 9843411
    226 1buw:B (1.9) BS01 HEM ? GO:0004601 ... P68871 9843411
    227 1buw:C (1.9) BS01 HEM ? GO:0004601 ... P69905 9843411
    228 1buw:D (1.9) BS01 HEM ? GO:0004601 ... P68871 9843411
    229 1bva:A (1.89) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 9836578
    230 1bvb:A (2.6) BS01 HEM ? GO:0042597 ... Q57142 9808046
    231 1bvb:A (2.6) BS02 HEM ? GO:0042597 ... Q57142 9808046
    232 1bvb:A (2.6) BS03 HEM ? GO:0042597 ... Q57142 9808046
    233 1bvb:A (2.6) BS04 HEM ? GO:0042597 ... Q57142 9808046
    234 1bvy:A (2.03) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 10051560
    235 1bvy:B (2.03) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 10051560
    236 1bz0:A (1.5) BS01 HEM ? GO:0004601 ... P69905 8448109
    237 1bz0:B (1.5) BS01 HEM ? GO:0004601 ... P68871 8448109
    238 1bz0:C (1.5) BS01 HEM ? GO:0004601 ... P69905 8448109
    239 1bz0:D (1.5) BS01 HEM ? GO:0004601 ... P68871 8448109
    240 1bz1:A (1.59) BS01 HEM ? GO:0004601 ... P69905 9894000
    241 1bz1:B (1.59) BS01 HEM ? GO:0004601 ... P68871 9894000
    242 1bz1:C (1.59) BS01 HEM ? GO:0004601 ... P69905 9894000
    243 1bz1:D (1.59) BS01 HEM ? GO:0004601 ... P68871 9894000
    244 1bz6:A (1.2) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10205052
    245 1bzp:A (1.15) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10205052
    246 1bzr:A (1.15) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10205052
    247 1bzz:A (1.59) BS01 HEM ? GO:0004601 ... P69905 9894000
    248 1bzz:B (1.59) BS01 HEM ? GO:0004601 ... P68871 9894000
    249 1bzz:C (1.59) BS01 HEM ? GO:0004601 ... P69905 9894000
    250 1bzz:D (1.59) BS01 HEM ? GO:0004601 ... P68871 9894000
    251 1c40:A (2.3) BS01 HEM ? GO:0004601 ... P01990 11375496
    252 1c40:B (2.3) BS01 HEM ? GO:0004601 ... P02118 11375496
    253 1c52:A (1.28) BS01 HEM ? GO:0009055 ... P04164 9281430
    254 1c53:A (1.8) BS01 HEM ? GO:0005506 ... P00120 1964450
    255 1c6o:A (2.0) BS01 HEM ? GO:0005506 ... P57736 10438600
    256 1c6o:B (2.0) BS01 HEM ? GO:0005506 ... P57736 10438600
    257 1c6r:A (1.9) BS01 HEM ? GO:0005506 ... P57736 10438600
    258 1c7b:A (1.803) BS01 HEM ? GO:0004601 ... P69905 10930828
    259 1c7b:B (1.803) BS01 HEM ? GO:0004601 ... P68871 10930828
    260 1c7b:C (1.803) BS01 HEM ? GO:0004601 ... P69905 10930828
    261 1c7b:D (1.803) BS01 HEM ? GO:0004601 ... P68871 10930828
    262 1c7c:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930828
    263 1c7c:A (1.8) BS02 HEM ? GO:0004601 ... P69905 10930828
    264 1c7c:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930828
    265 1c7c:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930828
    266 1c7d:A (1.8) BS01 HEM ? GO:0004601 ... P69905 10930828
    267 1c7d:A (1.8) BS02 HEM ? GO:0004601 ... P69905 10930828
    268 1c7d:B (1.8) BS01 HEM ? GO:0004601 ... P68871 10930828
    269 1c7d:D (1.8) BS01 HEM ? GO:0004601 ... P68871 10930828
    270 1c8i:A (2.0) BS04 HEM 1.11.1.7 GO:0000302 ... P28313 10915789
    271 1c8j:A (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    272 1c8j:B (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 N/A
    273 1cbl:A (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    274 1cbl:B (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    275 1cbl:C (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    276 1cbl:D (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    277 1cbm:A (1.74) BS01 HEM ? GO:0004601 ... P68871 8114096
    278 1cbm:B (1.74) BS01 HEM ? GO:0004601 ... P68871 8114096
    279 1cbm:C (1.74) BS01 HEM ? GO:0004601 ... P68871 8114096
    280 1cbm:D (1.74) BS01 HEM ? GO:0004601 ... P68871 8114096
    281 1cc5:A (2.5) BS01 HEM ? GO:0005506 ... P11732 2993632
    282 1cca:A (1.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8384877
    283 1ccb:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8384877
    284 1ccc:A (2.0) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8384877
    285 1cce:A (2.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7809133
    286 1ccg:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7809133
    287 1cci:A (2.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    288 1ccj:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 9514261
    289 1cck:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7703247
    290 1ccl:A (2.0) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 N/A
    291 1ccp:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 2169873
    292 1ced:A (-1.00) BS01 HEM ? GO:0005506 ... Q09099 N/A
    293 1cf9:A (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    294 1cf9:B (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    295 1cf9:C (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    296 1cf9:D (1.8) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 10488114
    297 1cfm:A (2.0) BS01 HEM ? GO:0005506 ... P23577 10869174
    298 1cfm:B (2.0) BS01 HEM ? GO:0005506 ... P23577 10869174
    299 1cfm:C (2.0) BS01 HEM ? GO:0005506 ... P23577 10869174
    300 1cg5:A (1.6) BS01 HEM ? GO:0004601 ... P56691 10393295
    301 1cg5:B (1.6) BS01 HEM ? GO:0004601 ... P56692 10393295
    302 1cg8:A (1.9) BS01 HEM ? GO:0004601 ... P56691 10393295
    303 1cg8:B (1.9) BS01 HEM ? GO:0004601 ... P56692 10393295
    304 1ch1:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    305 1ch2:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    306 1ch3:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    307 1ch4:A (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    308 1ch4:B (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    309 1ch4:C (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    310 1ch4:D (2.5) BS01 HEM ? GO:0004601 ... P68871 10080899
    311 1ch5:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    312 1ch7:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    313 1ch9:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    314 1cik:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    315 1cio:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    316 1ck6:A (1.9) BS05 HEM 1.11.1.7 GO:0000302 ... P28313 10504224
    317 1cl6:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    318 1cls:A (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    319 1cls:B (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    320 1cls:C (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    321 1cls:D (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    322 1cmj:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    323 1cmn:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 10671516
    324 1cmp:A (1.9) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8142383
    325 1cmq:A (2.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8142383
    326 1cmt:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8528082
    327 1cmu:A (2.1) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8528082
    328 1cmy:A (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    329 1cmy:B (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    330 1cmy:C (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    331 1cmy:D (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    332 1co8:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    333 1co9:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    334 1coh:A (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    335 1coh:C (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    336 1cp0:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    337 1cp4:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 2261467
    338 1cp5:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    339 1cpd:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    340 1cpe:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    341 1cpf:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    342 1cpg:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7972020
    343 1cpo:A (1.9) BS09 HEM 1.11.1.10 GO:0004601 ... P04963 8747463
    344 1cpq:A (1.72) BS01 HEM ? GO:0005506 ... P00147 8676382
    345 1cpr:A (2.1) BS02 HEM ? GO:0005506 ... P00147 15299853
    346 1cpt:A (2.3) BS01 HEM 1.14.-.- GO:0004497 ... P33006 8120894
    347 1cpw:A (2.2) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 11084036
    348 1cq2:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 10725379
    349 1cqe:A (3.1) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 8121489
    350 1cqe:B (3.1) BS01 HEM 1.14.99.1 GO:0004601 ... P05979 8121489
    351 1cqx:A (1.75) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 8557026
    352 1cqx:B (1.75) BS01 HEM 1.14.12.17 GO:0005344 ... P39662 8557026
    353 1cri:A (2.0) BS01 HEM ? GO:0005515 ... P00044 8114094
    354 1ctj:A (1.1) BS01 HEM ? GO:0005506 ... Q09099 8591027
    355 1cx2:A (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    356 1cx2:B (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    357 1cx2:C (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    358 1cx2:D (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    359 1cxp:A (1.8) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    360 1cxp:B (1.8) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    361 1cxp:C (1.8) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    362 1cxp:D (1.8) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    363 1cxy:A (1.65) BS01 HEM ? GO:0016020 ... P82291 10585439
    364 1cyf:A (2.35) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8547245
    365 1cyo:A (1.5) BS01 HEM ? GO:0020037 ... P00171 15299727
    366 1czj:A (2.16) BS02 HEM ? GO:0009055 ... P38554 8740362
    367 1czj:A (2.16) BS03 HEM ? GO:0009055 ... P38554 8740362
    368 1czj:A (2.16) BS04 HEM ? GO:0009055 ... P38554 8740362
    369 1czj:A (2.16) BS05 HEM ? GO:0009055 ... P38554 8740362
    370 1d06:A (1.4) BS01 HEM 2.7.13.3 GO:0006355 ... P10955 10926518
    371 1d0c:A (1.65) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    372 1d0c:B (1.65) BS04 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    373 1d0o:A (1.95) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    374 1d0o:B (1.95) BS04 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    375 1d1v:A (1.93) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    376 1d1v:B (1.93) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    377 1d1w:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    378 1d1w:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    379 1d1x:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    380 1d1x:B (2.0) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    381 1d1y:A (2.2) BS01 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    382 1d1y:B (2.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11331290
    383 1d2u:A (1.15) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 11560480
    384 1d2v:A (1.75) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    385 1d2v:B (1.75) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    386 1d2v:C (1.75) BS07 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    387 1d2v:D (1.75) BS07 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    388 1d3s:A (1.4) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 10876239
    389 1d5l:A (1.9) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    390 1d5l:B (1.9) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    391 1d5l:C (1.9) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    392 1d5l:D (1.9) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    393 1d7b:A (1.9) BS01 HEM 1.1.99.18 N/A Q01738 10673428
    394 1d7b:B (1.9) BS01 HEM 1.1.99.18 N/A Q01738 10673428
    395 1d7c:A (1.9) BS01 HEM 1.1.99.18 N/A Q01738 10673428
    396 1d7c:B (1.9) BS01 HEM 1.1.99.18 N/A Q01738 10673428
    397 1d7d:A (1.9) BS01 HEM 1.1.99.18 N/A Q01738 10673428
    398 1d7d:B (1.9) BS01 HEM 1.1.99.18 N/A Q01738 10673428
    399 1d7w:A (1.9) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 11705390
    400 1d7w:B (1.9) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 11705390

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218