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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 1z10:A (1.9) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2402 1z10:B (1.9) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2403 1z10:C (1.9) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2404 1z10:D (1.9) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2405 1z11:A (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2406 1z11:B (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2407 1z11:C (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2408 1z11:D (2.05) BS01 HEM 1.14.14.- GO:0004497 ... P11509 16086027
    2409 1z8o:A (1.7) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 15824115
    2410 1z8p:A (1.85) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 15824115
    2411 1z8q:A (2.0) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 15824115
    2412 1z8u:B (2.4) BS01 HEM ? GO:0004601 ... P69905 15931225
    2413 1z8u:B (2.4) BS02 HEM ? GO:0004601 ... P69905 15931225
    2414 1z8u:D (2.4) BS01 HEM ? GO:0004601 ... P69905 15931225
    2415 1z8u:D (2.4) BS02 HEM ? GO:0004601 ... P69905 15931225
    2416 1z9n:A (1.5) BS03 HEM 1.15.1.1 GO:0004784 ... Q59452 19103206
    2417 1z9n:B (1.5) BS01 HEM 1.15.1.1 GO:0004784 ... Q59452 19103206
    2418 1z9n:C (1.5) BS03 HEM 1.15.1.1 GO:0004784 ... Q59452 19103206
    2419 1z9n:D (1.5) BS01 HEM 1.15.1.1 GO:0004784 ... Q59452 19103206
    2420 1zby:A (1.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 12741816
    2421 1zbz:A (1.29) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 12741816
    2422 1zo4:A (1.46) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21875028
    2423 1zo4:B (1.46) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21875028
    2424 1zo9:A (1.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 18004886
    2425 1zo9:B (1.7) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 18004886
    2426 1zoa:A (1.74) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21875028
    2427 1zoa:B (1.74) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 21875028
    2428 1zoy:C (2.4) BS02 HEM ? GO:0006099 ... D0VWV4 15989954
    2429 1zoy:D (2.4) BS01 HEM ? GO:0005740 ... A5GZW8 15989954
    2430 1zp0:C (3.5) BS01 HEM ? GO:0006099 ... D0VWV4 15989954
    2431 1zp0:D (3.5) BS01 HEM ? GO:0005740 ... A5GZW8 15989954
    2432 1zrt:C (3.51) BS01 HEM ? GO:0005886 ... P0CY47 16034531
    2433 1zrt:C (3.51) BS02 HEM ? GO:0005886 ... P0CY47 16034531
    2434 1zrt:P (3.51) BS01 HEM ? GO:0005886 ... P0CY47 16034531
    2435 1zrt:P (3.51) BS02 HEM ? GO:0005886 ... P0CY47 16034531
    2436 1zvi:A (2.0) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 16033258
    2437 1zvl:A (2.5) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 16033258
    2438 1zvl:B (2.5) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 16033258
    2439 1zzq:A (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    2440 1zzq:B (1.9) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    2441 1zzr:A (2.05) BS02 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    2442 1zzr:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    2443 1zzs:A (1.85) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 16285725
    2444 1zzs:B (1.85) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 16285725
    2445 1zzt:A (2.14) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 16285725
    2446 1zzt:B (2.14) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 16285725
    2447 1zzu:A (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    2448 1zzu:B (1.9) BS04 HEM 1.14.13.39 GO:0004517 ... P29476 16285725
    2449 256b:A (1.4) BS01 HEM ? GO:0005506 ... P0ABE7 7031264
    2450 256b:B (1.4) BS01 HEM ? GO:0005506 ... P0ABE7 7031264
    2451 2a06:C (2.1) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    2452 2a06:C (2.1) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    2453 2a06:P (2.1) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    2454 2a06:P (2.1) BS03 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    2455 2a1m:A (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15994329
    2456 2a1m:B (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15994329
    2457 2a1n:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15994329
    2458 2a1n:B (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15994329
    2459 2a1o:A (1.55) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15994329
    2460 2a1o:B (1.55) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 15994329
    2461 2a3f:X (1.4) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2462 2a9e:A (1.76) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 N/A
    2463 2a9e:B (1.76) BS01 HEM 1.11.1.6 GO:0004096 ... P77872 N/A
    2464 2aa1:A (1.8) BS01 HEM ? GO:0004601 ... P45718 16299734
    2465 2aa1:B (1.8) BS01 HEM ? GO:0004601 ... P45721 16299734
    2466 2aa1:C (1.8) BS01 HEM ? GO:0004601 ... P45718 16299734
    2467 2aa1:D (1.8) BS01 HEM ? GO:0004601 ... P45721 16299734
    2468 2acp:X (1.4) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2469 2ah7:X (1.7) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2470 2aiu:A (1.6) BS01 HEM ? GO:0005739 ... P00015 16757556
    2471 2al0:X (1.6) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2472 2all:X (1.47) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2473 2amm:X (1.9) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2474 2amo:A (2.6) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 16126221
    2475 2amo:B (2.6) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 16126221
    2476 2an0:A (2.6) BS01 HEM 1.14.14.47 GO:0004517 ... O34453 16126221
    2477 2an2:A (2.6) BS02 HEM 1.14.14.47 GO:0004517 ... O34453 16126221
    2478 2anz:A (1.75) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2479 2aqd:A (1.35) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2480 2as1:A (1.55) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2481 2as2:A (1.45) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2482 2as3:A (1.4) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2483 2as4:A (1.3) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2484 2as6:A (1.45) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 16490206
    2485 2asn:X (1.7) BS01 HEM ? GO:0005576 ... Q26241 N/A
    2486 2at0:X (1.0) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 N/A
    2487 2at3:X (1.0) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 N/A
    2488 2atj:A (2.0) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9609699
    2489 2atj:B (2.0) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9609699
    2490 2auo:A (1.53) BS01 HEM ? GO:0001666 ... P02213 16262242
    2491 2auo:A (1.53) BS02 HEM ? GO:0001666 ... P02213 16262242
    2492 2auo:B (1.53) BS01 HEM ? GO:0001666 ... P02213 16262242
    2493 2aup:A (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    2494 2aup:B (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    2495 2aup:B (1.8) BS02 HEM ? GO:0001666 ... P02213 16262242
    2496 2auq:A (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    2497 2auq:A (1.8) BS02 HEM ? GO:0001666 ... P02213 16262242
    2498 2auq:B (1.8) BS01 HEM ? GO:0001666 ... P02213 16262242
    2499 2aur:A (2.3) BS01 HEM ? GO:0001666 ... P02213 16262242
    2500 2aur:A (2.3) BS02 HEM ? GO:0001666 ... P02213 16262242
    2501 2aur:B (2.3) BS01 HEM ? GO:0001666 ... P02213 16262242
    2502 2aur:B (2.3) BS02 HEM ? GO:0001666 ... P02213 16262242
    2503 2av0:A (1.5) BS01 HEM ? GO:0001666 ... P02213 16262242
    2504 2av0:A (1.5) BS02 HEM ? GO:0001666 ... P02213 16262242
    2505 2av0:B (1.5) BS01 HEM ? GO:0001666 ... P02213 16262242
    2506 2av0:B (1.5) BS02 HEM ? GO:0001666 ... P02213 16262242
    2507 2av3:A (1.7) BS01 HEM ? GO:0001666 ... P02213 16262242
    2508 2av3:A (1.7) BS02 HEM ? GO:0001666 ... P02213 16262242
    2509 2av3:B (1.7) BS01 HEM ? GO:0001666 ... P02213 16262242
    2510 2av3:B (1.7) BS02 HEM ? GO:0001666 ... P02213 16262242
    2511 2axt:E (3.0) BS01 HEM ? GO:0005506 ... Q8DIP0 16355230
    2512 2axt:F (3.0) BS01 HEM ? GO:0005506 ... Q8DIN9 16355230
    2513 2axt:V (3.0) BS01 HEM ? GO:0005506 ... P0A386 16355230
    2514 2axt:e (3.0) BS01 HEM ? GO:0005506 ... Q8DIP0 16355230
    2515 2axt:f (3.0) BS01 HEM ? GO:0005506 ... Q8DIN9 16355230
    2516 2axt:v (3.0) BS01 HEM ? GO:0005506 ... P0A386 16355230
    2517 2axx:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9425037
    2518 2b10:B (2.8) BS01 HEM ? GO:0005515 ... P00044 16227441
    2519 2b10:D (2.8) BS01 HEM ? GO:0005515 ... P00044 16227441
    2520 2b4z:A (1.5) BS01 HEM ? GO:0005739 ... P62894 17634981
    2521 2b7h:A (2.2) BS01 HEM ? GO:0004601 ... P60523 N/A
    2522 2b7h:B (2.2) BS01 HEM ? GO:0004601 ... P60526 N/A
    2523 2b7h:C (2.2) BS01 HEM ? GO:0004601 ... P60523 N/A
    2524 2b7h:D (2.2) BS01 HEM ? GO:0004601 ... P60526 N/A
    2525 2b7r:A (1.7) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2526 2b7r:A (1.7) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2527 2b7r:A (1.7) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2528 2b7r:A (1.7) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2529 2b7s:A (2.12) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2530 2b7s:A (2.12) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2531 2b7s:A (2.12) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2532 2b7s:A (2.12) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 16699170
    2533 2bcc:C (3.5) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    2534 2bcc:C (3.5) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    2535 2bcc:D (3.5) BS01 HEM 7.1.1.8 GO:0009055 ... P00125 9565029
    2536 2bdm:A (2.3) BS01 HEM 1.14.14.1 GO:0004497 ... P00178 16373351
    2537 2bhj:A (3.2) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 15781384
    2538 2bk9:A (1.2) BS01 HEM 1.11.1.7 GO:0001666 ... Q9VF15 15917230
    2539 2bkm:A (1.5) BS02 HEM ? GO:0005344 ... Q5L1S0 17126283
    2540 2bkm:B (1.5) BS02 HEM ? GO:0005344 ... Q5L1S0 17126283
    2541 2blh:A (1.77) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 15794647
    2542 2bli:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 15794647
    2543 2blj:M (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 15794647
    2544 2bmh:A (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15299332
    2545 2bmh:B (2.0) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 15299332
    2546 2bmm:A (2.48) BS01 HEM N/A GO:0005344 ... N/A 16098200
    2547 2boq:A (1.33) BS01 HEM 1.11.1.16 GO:0000302 ... O94753 16246366
    2548 2bs2:C (1.78) BS01 HEM 1.3.99.1 GO:0005886 ... P17413 17024183
    2549 2bs2:C (1.78) BS02 HEM 1.3.99.1 GO:0005886 ... P17413 17024183
    2550 2bs2:F (1.78) BS02 HEM 1.3.99.1 GO:0005886 ... P17413 17024183
    2551 2bs2:F (1.78) BS03 HEM 1.3.99.1 GO:0005886 ... P17413 17024183
    2552 2bs3:C (2.19) BS01 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2553 2bs3:C (2.19) BS02 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2554 2bs3:F (2.19) BS02 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2555 2bs3:F (2.19) BS03 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2556 2bs4:C (2.76) BS01 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2557 2bs4:C (2.76) BS02 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2558 2bs4:F (2.76) BS02 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2559 2bs4:F (2.76) BS03 HEM 1.3.99.1 GO:0005886 ... P17413 16380425
    2560 2bvj:A (2.1) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 16825192
    2561 2bvj:B (2.1) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 16825192
    2562 2bw9:M (1.68) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 16085709
    2563 2bwh:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 16085709
    2564 2bz9:A (2.21) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 17846131
    2565 2bz9:B (2.21) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 17846131
    2566 2c0k:A (2.6) BS01 HEM ? GO:0001666 ... O96457 16260762
    2567 2c0k:B (2.6) BS01 HEM ? GO:0001666 ... O96457 16260762
    2568 2c6h:A (2.35) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 16825192
    2569 2c6h:B (2.35) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 16825192
    2570 2c7x:A (1.75) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 16825192
    2571 2c8s:A (1.6) BS01 HEM ? GO:0005506 ... P14774 16414073
    2572 2ca0:A (2.85) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 N/A
    2573 2ca0:B (2.85) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 N/A
    2574 2cag:A (2.7) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 8901874
    2575 2cah:A (2.7) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 7791219
    2576 2cca:A (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 16566587
    2577 2cca:B (2.0) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 16566587
    2578 2ccd:A (2.1) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 16566587
    2579 2ccd:B (2.1) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 16566587
    2580 2ccp:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 2169873
    2581 2cd8:A (1.7) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 16825192
    2582 2cd8:B (1.7) BS01 HEM 1.14.15.33 GO:0004497 ... O87605 16825192
    2583 2cep:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8038157
    2584 2ci0:A (1.53) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 17846131
    2585 2cib:A (1.5) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 17846131
    2586 2civ:A (1.8) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2587 2ciw:A (1.15) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2588 2cix:A (1.8) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2589 2ciy:A (1.7) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2590 2ciz:A (1.3) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2591 2cj0:A (1.75) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2592 2cj1:A (1.7) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2593 2cj2:A (1.6) BS02 HEM 1.11.1.10 GO:0004601 ... P04963 16790441
    2594 2cl4:X (1.8) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 16784232
    2595 2cmn:A (2.3) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 16813836
    2596 2cn4:A (2.3) BS01 HEM ? GO:0005515 ... Q54450 17113104
    2597 2cn4:A (2.3) BS02 HEM ? GO:0005515 ... Q54450 17113104
    2598 2cn4:B (2.3) BS01 HEM ? GO:0005515 ... Q54450 17113104
    2599 2cn4:B (2.3) BS02 HEM ? GO:0005515 ... Q54450 17113104
    2600 2cp4:A (2.1) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 1742281

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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