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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 14664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 1w4y:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 15641789
    2002 1w5c:E (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 N/A
    2003 1w5c:F (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 N/A
    2004 1w5c:K (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 N/A
    2005 1w5c:L (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 N/A
    2006 1w92:A (1.7) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 15548613
    2007 1wad:A (1.8) BS02 HEM ? GO:0009055 ... P00133 8819167
    2008 1wad:A (1.8) BS03 HEM ? GO:0009055 ... P00133 8819167
    2009 1wad:A (1.8) BS04 HEM ? GO:0009055 ... P00133 8819167
    2010 1wad:A (1.8) BS05 HEM ? GO:0009055 ... P00133 8819167
    2011 1we1:A (2.5) BS01 HEM 1.14.14.18 GO:0004392 ... P72849 15560792
    2012 1we1:B (2.5) BS01 HEM 1.14.14.18 GO:0004392 ... P72849 15560792
    2013 1we1:C (2.5) BS01 HEM 1.14.14.18 GO:0004392 ... P72849 15560792
    2014 1we1:D (2.5) BS01 HEM 1.14.14.18 GO:0004392 ... P72849 15560792
    2015 1wej:F (1.8) BS01 HEM ? GO:0005515 ... P00004 9698550
    2016 1wiy:A (2.0) BS01 HEM ? GO:0004497 ... Q53W59 N/A
    2017 1wiy:B (2.0) BS01 HEM ? GO:0004497 ... Q53W59 N/A
    2018 1wla:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 9300804
    2019 1wmu:A (1.65) BS01 HEM ? GO:0004601 ... P83134 N/A
    2020 1wmu:B (1.65) BS01 HEM ? GO:0004601 ... P83133 N/A
    2021 1wnv:A (1.85) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2022 1wnv:B (1.85) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2023 1wnv:C (1.85) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2024 1wnw:A (1.7) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2025 1wnw:B (1.7) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2026 1wnw:C (1.7) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2027 1wnx:A (1.85) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2028 1wnx:B (1.85) BS01 HEM 1.14.14.18 GO:0004392 ... P71119 15528205
    2029 1wov:A (1.75) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    2030 1wov:B (1.75) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    2031 1wow:A (2.2) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    2032 1wow:B (2.2) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    2033 1wox:A (2.1) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    2034 1wox:B (2.1) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    2035 1wve:C (1.85) BS01 HEM 1.17.99.1 GO:0009055 ... P09787 15723539
    2036 1wve:D (1.85) BS01 HEM 1.17.99.1 GO:0009055 ... P09787 15723539
    2037 1wvp:A (1.53) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    2038 1x3k:A (1.64) BS01 HEM ? GO:0005344 ... Q7M422 17590288
    2039 1x3x:A (1.8) BS01 HEM ? GO:0016020 ... Q17091 16288599
    2040 1x3x:B (1.8) BS01 HEM ? GO:0016020 ... Q17091 16288599
    2041 1x46:A (1.5) BS01 HEM ? GO:0005344 ... Q7M421 17590288
    2042 1x8n:A (1.08) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    2043 1x8o:A (1.01) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    2044 1x8p:A (0.85) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    2045 1x8q:A (0.85) BS01 HEM 1.7.6.1 GO:0005576 ... Q94734 15504026
    2046 1x8v:A (1.55) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 15530358
    2047 1x9f:A (2.6) BS01 HEM ? GO:0005344 ... P13579 15504406
    2048 1x9f:A (2.6) BS02 HEM ? GO:0005344 ... P13579 15504406
    2049 1x9f:B (2.6) BS01 HEM ? GO:0001666 ... P02218 15504406
    2050 1x9f:C (2.6) BS01 HEM ? GO:0005344 ... P11069 15504406
    2051 1x9f:C (2.6) BS02 HEM ? GO:0005344 ... P11069 15504406
    2052 1x9f:D (2.6) BS01 HEM ? GO:0005344 ... O61233 15504406
    2053 1x9f:E (2.6) BS01 HEM ? GO:0005344 ... P13579 15504406
    2054 1x9f:E (2.6) BS02 HEM ? GO:0005344 ... P13579 15504406
    2055 1x9f:F (2.6) BS01 HEM ? GO:0001666 ... P02218 15504406
    2056 1x9f:G (2.6) BS01 HEM ? GO:0005344 ... P11069 15504406
    2057 1x9f:H (2.6) BS01 HEM ? GO:0005344 ... O61233 15504406
    2058 1x9f:H (2.6) BS02 HEM ? GO:0005344 ... O61233 15504406
    2059 1x9f:I (2.6) BS01 HEM ? GO:0005344 ... P13579 15504406
    2060 1x9f:I (2.6) BS02 HEM ? GO:0005344 ... P13579 15504406
    2061 1x9f:J (2.6) BS01 HEM ? GO:0001666 ... P02218 15504406
    2062 1x9f:K (2.6) BS01 HEM ? GO:0005344 ... P11069 15504406
    2063 1x9f:L (2.6) BS01 HEM ? GO:0005344 ... O61233 15504406
    2064 1xbn:A (2.5) BS02 HEM ? GO:0020037 ... Q8RBX6 15472039
    2065 1xch:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 9300804
    2066 1xj2:A (2.0) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 15779889
    2067 1xj3:A (1.9) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 15779889
    2068 1xj4:A (1.8) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 15779889
    2069 1xj4:B (1.8) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 15779889
    2070 1xj6:A (1.9) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 15779889
    2071 1xj6:B (1.9) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 15779889
    2072 1xjz:A (1.88) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15690204
    2073 1xjz:B (1.88) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15690204
    2074 1xk0:A (2.18) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15690204
    2075 1xk0:B (2.18) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15690204
    2076 1xk1:A (2.08) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15690204
    2077 1xk1:B (2.08) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15690204
    2078 1xk2:A (2.2) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15525643
    2079 1xk2:B (2.2) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15525643
    2080 1xk3:A (2.08) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15525643
    2081 1xk3:B (2.08) BS01 HEM 1.14.14.18 GO:0004392 ... P09601 15525643
    2082 1xme:A (2.3) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 15735345
    2083 1xq5:A (1.9) BS01 HEM ? GO:0004601 ... D0VWV2 N/A
    2084 1xq5:B (1.9) BS01 HEM ? GO:0004601 ... D0VWV3 N/A
    2085 1xq5:C (1.9) BS01 HEM ? GO:0004601 ... D0VWV2 N/A
    2086 1xq5:D (1.9) BS01 HEM ? GO:0004601 ... D0VWV3 N/A
    2087 1xqd:A (1.8) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 15313618
    2088 1xxt:A (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    2089 1xxt:B (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    2090 1xxt:C (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    2091 1xxt:D (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    2092 1xy0:A (1.99) BS01 HEM ? GO:0004601 ... P69905 15835899
    2093 1xy0:B (1.99) BS01 HEM ? GO:0004601 ... P68871 15835899
    2094 1xy0:C (1.99) BS01 HEM ? GO:0004601 ... P69905 15835899
    2095 1xy0:D (1.99) BS01 HEM ? GO:0004601 ... P68871 15835899
    2096 1xye:A (2.13) BS01 HEM ? GO:0004601 ... P69905 15751957
    2097 1xye:B (2.13) BS01 HEM ? GO:0004601 ... P68871 15751957
    2098 1xye:C (2.13) BS01 HEM ? GO:0004601 ... P69905 15751957
    2099 1xye:D (2.13) BS01 HEM ? GO:0004601 ... P68871 15751957
    2100 1xz2:A (1.9) BS01 HEM ? GO:0004601 ... P69905 15751957
    2101 1xz2:B (1.9) BS01 HEM ? GO:0004601 ... P68871 15751957
    2102 1xz2:C (1.9) BS01 HEM ? GO:0004601 ... P69905 15751957
    2103 1xz2:D (1.9) BS01 HEM ? GO:0004601 ... P68871 15751957
    2104 1xz4:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15751957
    2105 1xz4:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15751957
    2106 1xz4:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15751957
    2107 1xz4:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15751957
    2108 1xz5:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2109 1xz5:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2110 1xz5:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2111 1xz5:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2112 1xz7:A (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2113 1xz7:B (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2114 1xz7:C (1.9) BS01 HEM ? GO:0004601 ... P69905 15835899
    2115 1xz7:D (1.9) BS01 HEM ? GO:0004601 ... P68871 15835899
    2116 1xzu:A (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    2117 1xzu:B (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    2118 1xzu:C (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    2119 1xzu:D (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    2120 1xzv:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2121 1xzv:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2122 1xzv:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2123 1xzv:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2124 1y01:B (2.8) BS01 HEM ? GO:0004601 ... P69905 15550245
    2125 1y09:A (2.25) BS01 HEM ? GO:0004601 ... P69905 15835899
    2126 1y09:B (2.25) BS01 HEM ? GO:0004601 ... P68871 15835899
    2127 1y09:C (2.25) BS01 HEM ? GO:0004601 ... P69905 15835899
    2128 1y09:D (2.25) BS01 HEM ? GO:0004601 ... P68871 15835899
    2129 1y0a:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2130 1y0a:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    2131 1y0a:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2132 1y0a:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    2133 1y0c:A (2.3) BS01 HEM ? GO:0004601 ... P69905 15835899
    2134 1y0c:B (2.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    2135 1y0c:C (2.3) BS01 HEM ? GO:0004601 ... P69905 15835899
    2136 1y0c:D (2.3) BS01 HEM ? GO:0004601 ... P68871 15835899
    2137 1y0d:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2138 1y0d:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2139 1y0d:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2140 1y0d:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2141 1y0p:A (1.5) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 N/A
    2142 1y0p:A (1.5) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 N/A
    2143 1y0p:A (1.5) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 N/A
    2144 1y0p:A (1.5) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 N/A
    2145 1y0t:A (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    2146 1y0t:B (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    2147 1y0t:C (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    2148 1y0t:D (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    2149 1y0w:A (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    2150 1y0w:B (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    2151 1y0w:C (2.14) BS01 HEM ? GO:0004601 ... P69905 15835899
    2152 1y0w:D (2.14) BS01 HEM ? GO:0004601 ... P68871 15835899
    2153 1y21:A (1.75) BS02 HEM ? GO:0004439 ... O76745 15637157
    2154 1y22:A (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    2155 1y22:B (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    2156 1y22:C (2.16) BS01 HEM ? GO:0004601 ... P69905 15835899
    2157 1y22:D (2.16) BS01 HEM ? GO:0004601 ... P68871 15835899
    2158 1y28:A (2.1) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12820879
    2159 1y2z:A (2.07) BS01 HEM ? GO:0004601 ... P69905 15835899
    2160 1y2z:B (2.07) BS01 HEM ? GO:0004601 ... P68871 15835899
    2161 1y2z:C (2.07) BS01 HEM ? GO:0004601 ... P69905 15835899
    2162 1y2z:D (2.07) BS01 HEM ? GO:0004601 ... P68871 15835899
    2163 1y31:A (2.13) BS01 HEM ? GO:0004601 ... P69905 15835899
    2164 1y31:B (2.13) BS01 HEM ? GO:0004601 ... P68871 15835899
    2165 1y31:C (2.13) BS01 HEM ? GO:0004601 ... P69905 15835899
    2166 1y31:D (2.13) BS01 HEM ? GO:0004601 ... P68871 15835899
    2167 1y35:A (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    2168 1y35:B (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    2169 1y35:C (2.12) BS01 HEM ? GO:0004601 ... P69905 15835899
    2170 1y35:D (2.12) BS01 HEM ? GO:0004601 ... P68871 15835899
    2171 1y45:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    2172 1y45:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    2173 1y45:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    2174 1y45:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    2175 1y46:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2176 1y46:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    2177 1y46:C (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2178 1y46:D (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899
    2179 1y4b:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2180 1y4b:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2181 1y4b:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15835899
    2182 1y4b:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15835899
    2183 1y4f:A (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    2184 1y4f:B (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    2185 1y4f:C (2.0) BS01 HEM ? GO:0004601 ... P69905 15835899
    2186 1y4f:D (2.0) BS01 HEM ? GO:0004601 ... P68871 15835899
    2187 1y4g:A (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    2188 1y4g:B (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    2189 1y4g:C (1.91) BS01 HEM ? GO:0004601 ... P69905 15835899
    2190 1y4g:D (1.91) BS01 HEM ? GO:0004601 ... P68871 15835899
    2191 1y4p:A (1.98) BS01 HEM ? GO:0004601 ... P69905 15835899
    2192 1y4p:B (1.98) BS01 HEM ? GO:0004601 ... P68871 15835899
    2193 1y4p:C (1.98) BS01 HEM ? GO:0004601 ... P69905 15835899
    2194 1y4p:D (1.98) BS01 HEM ? GO:0004601 ... P68871 15835899
    2195 1y4q:A (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2196 1y4q:B (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2197 1y4q:C (2.11) BS01 HEM ? GO:0004601 ... P69905 15835899
    2198 1y4q:D (2.11) BS01 HEM ? GO:0004601 ... P68871 15835899
    2199 1y4r:A (2.22) BS01 HEM ? GO:0004601 ... P69905 15835899
    2200 1y4r:B (2.22) BS01 HEM ? GO:0004601 ... P68871 15835899

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218