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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 8jek:C (2.7) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    4602 8jek:C (2.7) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    4603 8k5o:C (2.42) BS01 HEC ? GO:0015979 ... A0A0X8X829 38411333
    4604 8k5o:C (2.42) BS02 HEC ? GO:0015979 ... A0A0X8X829 38411333
    4605 8k5o:C (2.42) BS03 HEC ? GO:0015979 ... A0A0X8X829 38411333
    4606 8k5o:C (2.42) BS04 HEC ? GO:0015979 ... A0A0X8X829 38411333
    4607 8k6j:C (2.77) BS01 HEC ? N/A M1V1V5 N/A
    4608 8k6j:C (2.77) BS02 HEC ? N/A M1V1V5 N/A
    4609 8k6j:C (2.77) BS03 HEC ? N/A M1V1V5 N/A
    4610 8k6k:C (2.4) BS01 HEC ? N/A M1V1V5 N/A
    4611 8k6k:C (2.4) BS02 HEC ? N/A M1V1V5 N/A
    4612 8k6k:C (2.4) BS03 HEC ? N/A M1V1V5 N/A
    4613 8k9e:A (3.33) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    4614 8k9e:A (3.33) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    4615 8k9e:A (3.33) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    4616 8k9e:A (3.33) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    4617 8k9e:A (3.33) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    4618 8k9e:B (3.33) BS01 HEC ? N/A A9WEV3 38299372
    4619 8k9e:B (3.33) BS02 HEC ? N/A A9WEV3 38299372
    4620 8k9e:E (3.33) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    4621 8k9e:E (3.33) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    4622 8k9f:A (2.9) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    4623 8k9f:A (2.9) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    4624 8k9f:A (2.9) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    4625 8k9f:A (2.9) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    4626 8k9f:A (2.9) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    4627 8k9f:B (2.9) BS01 HEC ? N/A A9WEV3 38299372
    4628 8k9f:B (2.9) BS02 HEC ? N/A A9WEV3 38299372
    4629 8k9f:C (2.9) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    4630 8k9f:E (2.9) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    4631 8k9f:E (2.9) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    4632 8k9f:E (2.9) BS03 HEC ? GO:0009055 ... A9WEV6 38299372
    4633 8ovc:C (2.8) BS01 HEC N/A N/A A0R050 38902248
    4634 8ovc:C (2.8) BS02 HEC N/A N/A A0R050 38902248
    4635 8ovc:O (2.8) BS01 HEC N/A N/A A0R050 38902248
    4636 8ovc:O (2.8) BS02 HEC N/A N/A A0R050 38902248
    4637 8ovd:C (2.3) BS01 HEC N/A N/A A0R050 38902248
    4638 8ovd:C (2.3) BS02 HEC N/A N/A A0R050 38902248
    4639 8ovd:O (2.3) BS01 HEC N/A N/A A0R050 38902248
    4640 8ovd:O (2.3) BS02 HEC N/A N/A A0R050 38902248
    4641 8ovd:W (2.3) BS01 HEC N/A N/A A0R562 38902248
    4642 8ovd:b (2.3) BS02 HEC N/A N/A A0R562 38902248
    4643 8p65:D (3.0) BS01 HEC N/A N/A P00125 N/A
    4644 8p65:Q (3.0) BS01 HEC N/A N/A P00125 N/A
    4645 8pw5:D (3.6) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    4646 8pw5:O (3.6) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    4647 8pw6:D (3.3) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    4648 8pw6:O (3.3) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    4649 8pw7:D (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    4650 8pw7:O (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    4651 8q1b:D (3.4) BS01 HEC 7.1.1.8 GO:0005739 ... O59680 37939086
    4652 8q1b:O (3.4) BS01 HEC 7.1.1.8 GO:0005739 ... O59680 37939086
    4653 8q1v:A (1.4) BS01 HEC ? GO:0009055 ... C5BNC6 38446458
    4654 8q1w:A (1.8) BS01 HEC ? GO:0009055 ... C5BNC6 38446458
    4655 8q1w:B (1.8) BS01 HEC ? GO:0009055 ... C5BNC6 38446458
    4656 8q1w:C (1.8) BS01 HEC ? GO:0009055 ... C5BNC6 38446458
    4657 8qbq:A (1.81) BS05 HEC N/A N/A Q8EG34 39158169
    4658 8qbq:A (1.81) BS06 HEC N/A N/A Q8EG34 39158169
    4659 8qbq:A (1.81) BS07 HEC N/A N/A Q8EG34 39158169
    4660 8qbq:A (1.81) BS08 HEC N/A N/A Q8EG34 39158169
    4661 8qbq:A (1.81) BS09 HEC N/A N/A Q8EG34 39158169
    4662 8qbq:A (1.81) BS10 HEC N/A N/A Q8EG34 39158169
    4663 8qbq:A (1.81) BS11 HEC N/A N/A Q8EG34 39158169
    4664 8qbq:A (1.81) BS12 HEC N/A N/A Q8EG34 39158169
    4665 8qbq:A (1.81) BS13 HEC N/A N/A Q8EG34 39158169
    4666 8qbq:A (1.81) BS14 HEC N/A N/A Q8EG34 39158169
    4667 8qbz:A (1.9) BS01 HEC N/A N/A Q8EG34 39158169
    4668 8qbz:A (1.9) BS02 HEC N/A N/A Q8EG34 39158169
    4669 8qbz:A (1.9) BS03 HEC N/A N/A Q8EG34 39158169
    4670 8qbz:A (1.9) BS04 HEC N/A N/A Q8EG34 39158169
    4671 8qbz:A (1.9) BS05 HEC N/A N/A Q8EG34 39158169
    4672 8qbz:A (1.9) BS06 HEC N/A N/A Q8EG34 39158169
    4673 8qbz:A (1.9) BS07 HEC N/A N/A Q8EG34 39158169
    4674 8qbz:A (1.9) BS08 HEC N/A N/A Q8EG34 39158169
    4675 8qbz:A (1.9) BS09 HEC N/A N/A Q8EG34 39158169
    4676 8qbz:A (1.9) BS10 HEC N/A N/A Q8EG34 39158169
    4677 8qc9:A (2.0) BS01 HEC N/A N/A Q8EG34 39158169
    4678 8qc9:A (2.0) BS02 HEC N/A N/A Q8EG34 39158169
    4679 8qc9:A (2.0) BS03 HEC N/A N/A Q8EG34 39158169
    4680 8qc9:A (2.0) BS04 HEC N/A N/A Q8EG34 39158169
    4681 8qc9:A (2.0) BS05 HEC N/A N/A Q8EG34 39158169
    4682 8qc9:A (2.0) BS06 HEC N/A N/A Q8EG34 39158169
    4683 8qc9:A (2.0) BS07 HEC N/A N/A Q8EG34 39158169
    4684 8qc9:A (2.0) BS08 HEC N/A N/A Q8EG34 39158169
    4685 8qc9:A (2.0) BS09 HEC N/A N/A Q8EG34 39158169
    4686 8qc9:A (2.0) BS10 HEC N/A N/A Q8EG34 39158169
    4687 8qgf:A (1.32) BS03 HEC N/A N/A I6NAW4 N/A
    4688 8rv0:Y (1.55) BS01 HEC N/A GO:0042279 ... N/A N/A
    4689 8rv0:Y (1.55) BS02 HEC N/A GO:0042279 ... N/A N/A
    4690 8rv0:Y (1.55) BS03 HEC N/A GO:0042279 ... N/A N/A
    4691 8rv0:Y (1.55) BS04 HEC N/A GO:0042279 ... N/A N/A
    4692 8rv0:Y (1.55) BS05 HEC N/A GO:0042279 ... N/A N/A
    4693 8rv0:Y (1.55) BS06 HEC N/A GO:0042279 ... N/A N/A
    4694 8rv0:Y (1.55) BS07 HEC N/A GO:0042279 ... N/A N/A
    4695 8rv0:Y (1.55) BS08 HEC N/A GO:0042279 ... N/A N/A
    4696 8rvm:YYY (1.6) BS01 HEC N/A GO:0042279 ... N/A N/A
    4697 8rvm:YYY (1.6) BS02 HEC N/A GO:0042279 ... N/A N/A
    4698 8rvm:YYY (1.6) BS03 HEC N/A GO:0042279 ... N/A N/A
    4699 8rvm:YYY (1.6) BS04 HEC N/A GO:0042279 ... N/A N/A
    4700 8rvm:YYY (1.6) BS05 HEC N/A GO:0042279 ... N/A N/A
    4701 8rvm:YYY (1.6) BS06 HEC N/A GO:0042279 ... N/A N/A
    4702 8rvm:YYY (1.6) BS07 HEC N/A GO:0042279 ... N/A N/A
    4703 8rvm:YYY (1.6) BS08 HEC N/A GO:0042279 ... N/A N/A
    4704 8rxu:AAA (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    4705 8rxu:AAA (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    4706 8rxu:AAA (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    4707 8rxu:AAA (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    4708 8rxu:AAA (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    4709 8rxu:AAA (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    4710 8rxu:AAA (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    4711 8rxu:AAA (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    4712 8rxu:MMM (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    4713 8rxu:MMM (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    4714 8rxu:MMM (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    4715 8rxu:MMM (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    4716 8rxu:MMM (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    4717 8rxu:MMM (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    4718 8rxu:MMM (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    4719 8rxu:MMM (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    4720 8rxu:YYY (1.737) BS01 HEC N/A GO:0042279 ... N/A N/A
    4721 8rxu:YYY (1.737) BS02 HEC N/A GO:0042279 ... N/A N/A
    4722 8rxu:YYY (1.737) BS03 HEC N/A GO:0042279 ... N/A N/A
    4723 8rxu:YYY (1.737) BS04 HEC N/A GO:0042279 ... N/A N/A
    4724 8rxu:YYY (1.737) BS05 HEC N/A GO:0042279 ... N/A N/A
    4725 8rxu:YYY (1.737) BS06 HEC N/A GO:0042279 ... N/A N/A
    4726 8rxu:YYY (1.737) BS07 HEC N/A GO:0042279 ... N/A N/A
    4727 8rxu:YYY (1.737) BS08 HEC N/A GO:0042279 ... N/A N/A
    4728 8smr:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    4729 8smr:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G5 37751552
    4730 8smr:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G5 37751552
    4731 8smr:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    4732 8smr:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    4733 8smr:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    4734 8smr:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    4735 8smr:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    4736 8smr:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    4737 8snh:E (2.7) BS04 HEC 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    4738 8snh:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    4739 8snh:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G2 37751552
    4740 8snh:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G2 37751552
    4741 8snh:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    4742 8snh:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    4743 8snh:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    4744 8snh:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    4745 8snh:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    4746 8snh:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    4747 8uf3:A (2.45) BS01 HEC N/A N/A B4RQ30 38330683
    4748 8uf3:A (2.45) BS02 HEC N/A N/A B4RQ30 38330683
    4749 8uf3:B (2.45) BS01 HEC N/A N/A B4RQ30 38330683
    4750 8uf3:B (2.45) BS02 HEC N/A N/A B4RQ30 38330683
    4751 8ugd:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4752 8ugd:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4753 8uge:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4754 8uge:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4755 8ugf:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4756 8ugf:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4757 8ugg:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4758 8ugg:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4759 8ugh:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4760 8ugh:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4761 8ugi:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4762 8ugi:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4763 8ugj:3D (2.3) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4764 8ugj:3Q (2.3) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4765 8ugk:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4766 8ugk:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    4767 8ugn:3D (2.7) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4768 8ugn:3Q (2.7) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4769 8ugr:3D (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4770 8ugr:3Q (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4771 8ugr:6D (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4772 8ugr:6Q (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    4773 8x2j:A (2.7) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    4774 8x2j:A (2.7) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    4775 8x2j:A (2.7) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    4776 8x2j:A (2.7) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    4777 8x2j:A (2.7) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    4778 8x2j:B (2.7) BS01 HEC ? N/A A9WEV3 38299372
    4779 8x2j:B (2.7) BS02 HEC ? N/A A9WEV3 38299372
    4780 8x2j:C (2.7) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    4781 8x2j:E (2.7) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    4782 8x2j:E (2.7) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    4783 8xcm:C (3.08) BS01 HEC ? N/A M1V1V5 N/A
    4784 8xcm:C (3.08) BS02 HEC ? N/A M1V1V5 N/A
    4785 8xcm:C (3.08) BS03 HEC ? N/A M1V1V5 N/A
    4786 8xcn:C (3.02) BS01 HEC ? N/A M1V1V5 N/A
    4787 8xcn:C (3.02) BS02 HEC ? N/A M1V1V5 N/A
    4788 8xcn:C (3.02) BS03 HEC ? N/A M1V1V5 N/A
    4789 8yts:A (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    4790 8yts:B (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    4791 9evx:V (1.71) BS01 HEC ? N/A P0A386 38900892
    4792 9evx:v (1.71) BS01 HEC ? N/A P0A386 38900892
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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