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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 2wjm:C (1.95) BS03 HEC ? GO:0005506 ... P07173 19743880
    1202 2wjm:C (1.95) BS04 HEC ? GO:0005506 ... P07173 19743880
    1203 2wjn:C (1.86) BS01 HEC ? GO:0005506 ... P07173 19743880
    1204 2wjn:C (1.86) BS02 HEC ? GO:0005506 ... P07173 19743880
    1205 2wjn:C (1.86) BS03 HEC ? GO:0005506 ... P07173 19743880
    1206 2wjn:C (1.86) BS04 HEC ? GO:0005506 ... P07173 19743880
    1207 2x5u:C (3.0) BS01 HEC ? GO:0005506 ... P07173 20431017
    1208 2x5u:C (3.0) BS02 HEC ? GO:0005506 ... P07173 20431017
    1209 2x5u:C (3.0) BS03 HEC ? GO:0005506 ... P07173 20431017
    1210 2x5u:C (3.0) BS04 HEC ? GO:0005506 ... P07173 20431017
    1211 2x5v:C (3.0) BS01 HEC ? GO:0005506 ... P07173 20431017
    1212 2x5v:C (3.0) BS02 HEC ? GO:0005506 ... P07173 20431017
    1213 2x5v:C (3.0) BS03 HEC ? GO:0005506 ... P07173 20431017
    1214 2x5v:C (3.0) BS04 HEC ? GO:0005506 ... P07173 20431017
    1215 2xl6:A (1.07) BS01 HEC ? GO:0005506 ... P00138 21073879
    1216 2xl8:A (1.14) BS01 HEC ? GO:0005506 ... P00138 21073879
    1217 2xld:A (1.4) BS01 HEC ? GO:0005506 ... P00138 21073879
    1218 2xle:A (1.12) BS01 HEC ? GO:0005506 ... P00138 21073879
    1219 2xlh:A (1.14) BS01 HEC ? GO:0005506 ... P00138 21073879
    1220 2xlm:A (1.19) BS01 HEC ? GO:0005506 ... P00138 21073879
    1221 2xlo:A (1.24) BS01 HEC ? GO:0005506 ... P00138 21073879
    1222 2xlv:A (1.24) BS01 HEC ? GO:0005506 ... P00138 21073879
    1223 2xlw:A (1.17) BS01 HEC ? GO:0005506 ... P00138 21073879
    1224 2xm0:A (1.25) BS01 HEC ? GO:0005506 ... P00138 21073879
    1225 2xm4:A (1.1) BS01 HEC ? GO:0005506 ... P00138 21073879
    1226 2xts:A (1.33) BS03 HEC 1.8.2.1 GO:0006790 ... P72178 21147779
    1227 2xts:B (1.33) BS01 HEC ? GO:0009055 ... O07819 21147779
    1228 2xts:C (1.33) BS03 HEC 1.8.2.1 GO:0006790 ... P72178 21147779
    1229 2xts:D (1.33) BS01 HEC ? GO:0009055 ... O07819 21147779
    1230 2ybb:D (19.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 21909073
    1231 2ybb:d (19.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 21909073
    1232 2ycc:A (1.9) BS01 HEC ? GO:0005515 ... P00044 1311391
    1233 2yev:B (2.36) BS03 HEC 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    1234 2yev:E (2.36) BS03 HEC 7.1.1.9 GO:0004129 ... Q5SLI2 22763450
    1235 2yiu:B (2.7) BS01 HEC 1.10.2.2 GO:0009055 ... P13627 21996020
    1236 2yiu:E (2.7) BS01 HEC 1.10.2.2 GO:0009055 ... P13627 21996020
    1237 2yk3:A (1.55) BS01 HEC ? GO:0005739 ... P00078 19459937
    1238 2yk3:B (1.55) BS01 HEC ? GO:0005739 ... P00078 19459937
    1239 2yk3:C (1.55) BS01 HEC ? GO:0005739 ... P00078 19459937
    1240 2ykz:A (0.84) BS01 HEC ? GO:0005506 ... P00138 21900609
    1241 2yl0:A (0.95) BS01 HEC ? GO:0005506 ... P00138 21900609
    1242 2yl1:A (1.03) BS01 HEC ? GO:0005506 ... P00138 21900609
    1243 2yl3:A (1.04) BS01 HEC ? GO:0005506 ... P00138 21900609
    1244 2yl7:A (0.9) BS01 HEC ? GO:0005506 ... P00138 21900609
    1245 2yld:A (1.25) BS01 HEC ? GO:0005506 ... P00138 21900609
    1246 2ylg:A (1.05) BS01 HEC ? GO:0005506 ... P00138 21900609
    1247 2yli:A (1.45) BS01 HEC ? GO:0005506 ... P00138 21900609
    1248 2yqb:A (1.41) BS03 HEC 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    1249 2z47:A (1.6) BS01 HEC ? GO:0009055 ... P00132 N/A
    1250 2z47:A (1.6) BS02 HEC ? GO:0009055 ... P00132 N/A
    1251 2z47:A (1.6) BS03 HEC ? GO:0009055 ... P00132 N/A
    1252 2z47:A (1.6) BS04 HEC ? GO:0009055 ... P00132 N/A
    1253 2z47:B (1.6) BS01 HEC ? GO:0009055 ... P00132 N/A
    1254 2z47:B (1.6) BS02 HEC ? GO:0009055 ... P00132 N/A
    1255 2z47:B (1.6) BS03 HEC ? GO:0009055 ... P00132 N/A
    1256 2z47:B (1.6) BS04 HEC ? GO:0009055 ... P00132 N/A
    1257 2zo5:A (1.7) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1258 2zo5:A (1.7) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1259 2zo5:A (1.7) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1260 2zo5:A (1.7) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1261 2zo5:A (1.7) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1262 2zo5:A (1.7) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1263 2zo5:A (1.7) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1264 2zo5:A (1.7) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1265 2zo5:B (1.7) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1266 2zo5:B (1.7) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1267 2zo5:B (1.7) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1268 2zo5:B (1.7) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1269 2zo5:B (1.7) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1270 2zo5:B (1.7) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1271 2zo5:B (1.7) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1272 2zo5:B (1.7) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1273 2zxy:A (1.15) BS01 HEC ? GO:0005506 ... O67504 19622864
    1274 2zzs:1 (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1275 2zzs:2 (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1276 2zzs:2 (1.8) BS02 HEC ? GO:0005506 ... Q87MF5 N/A
    1277 2zzs:3 (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1278 2zzs:4 (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1279 2zzs:5 (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1280 2zzs:6 (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1281 2zzs:A (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1282 2zzs:B (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1283 2zzs:B (1.8) BS02 HEC ? GO:0005506 ... Q87MF5 N/A
    1284 2zzs:C (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1285 2zzs:D (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1286 2zzs:E (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1287 2zzs:F (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1288 2zzs:G (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1289 2zzs:H (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1290 2zzs:I (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1291 2zzs:J (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1292 2zzs:K (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1293 2zzs:L (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1294 2zzs:M (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1295 2zzs:N (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1296 2zzs:O (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1297 2zzs:P (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1298 2zzs:Q (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1299 2zzs:R (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1300 2zzs:R (1.8) BS02 HEC ? GO:0005506 ... Q87MF5 N/A
    1301 2zzs:S (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1302 2zzs:S (1.8) BS02 HEC ? GO:0005506 ... Q87MF5 N/A
    1303 2zzs:T (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1304 2zzs:U (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1305 2zzs:V (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1306 2zzs:W (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1307 2zzs:X (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1308 2zzs:X (1.8) BS02 HEC ? GO:0005506 ... Q87MF5 N/A
    1309 2zzs:Y (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1310 2zzs:Z (1.8) BS01 HEC ? GO:0005506 ... Q87MF5 N/A
    1311 3a9f:A (1.3) BS01 HEC ? GO:0009055 ... O07091 20156447
    1312 3a9f:B (1.3) BS01 HEC ? GO:0009055 ... O07091 20156447
    1313 3cp5:A (1.24) BS01 HEC ? GO:0009055 ... B3FQS5 18855424
    1314 3cwb:D (3.51) BS01 HEC N/A GO:0009055 ... N/A 18996700
    1315 3cwb:Q (3.51) BS01 HEC N/A GO:0009055 ... N/A 18996700
    1316 3cyt:I (1.8) BS01 HEC ? GO:0005739 ... P81459 6256733
    1317 3cyt:O (1.8) BS01 HEC ? GO:0005739 ... P81459 6256733
    1318 3d1i:A (1.8) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1319 3d1i:A (1.8) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1320 3d1i:A (1.8) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1321 3d1i:A (1.8) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1322 3d1i:A (1.8) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1323 3d1i:A (1.8) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1324 3d1i:A (1.8) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1325 3d1i:A (1.8) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1326 3d1i:B (1.8) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1327 3d1i:B (1.8) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1328 3d1i:B (1.8) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1329 3d1i:B (1.8) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1330 3d1i:B (1.8) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1331 3d1i:B (1.8) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1332 3d1i:B (1.8) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1333 3d1i:B (1.8) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1334 3d38:C (3.21) BS01 HEC ? GO:0005506 ... P07173 18831551
    1335 3d38:C (3.21) BS02 HEC ? GO:0005506 ... P07173 18831551
    1336 3d38:C (3.21) BS03 HEC ? GO:0005506 ... P07173 18831551
    1337 3d38:C (3.21) BS04 HEC ? GO:0005506 ... P07173 18831551
    1338 3dmi:A (1.5) BS01 HEC ? GO:0005506 ... Q8GTB5 19129656
    1339 3dp5:A (1.86) BS01 HEC ? GO:0005506 ... Q74AE4 18703839
    1340 3e7s:A (2.5) BS02 HEC 1.14.13.39 GO:0004517 ... P29473 18849972
    1341 3e7s:B (2.5) BS03 HEC 1.14.13.39 GO:0004517 ... P29473 18849972
    1342 3eah:A (2.44) BS01 HEC 1.14.13.39 GO:0004517 ... P29474 18849972
    1343 3eah:B (2.44) BS02 HEC 1.14.13.39 GO:0004517 ... P29474 18849972
    1344 3ej8:A (2.55) BS01 HEC 1.14.13.39 GO:0004517 ... P35228 18849972
    1345 3ej8:B (2.55) BS03 HEC 1.14.13.39 GO:0004517 ... P35228 18849972
    1346 3ej8:C (2.55) BS01 HEC 1.14.13.39 GO:0004517 ... P35228 18849972
    1347 3ej8:D (2.55) BS03 HEC 1.14.13.39 GO:0004517 ... P35228 18849972
    1348 3f29:A (2.0) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1349 3f29:A (2.0) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1350 3f29:A (2.0) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1351 3f29:A (2.0) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1352 3f29:A (2.0) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1353 3f29:A (2.0) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1354 3f29:A (2.0) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1355 3f29:A (2.0) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1356 3f29:B (2.0) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1357 3f29:B (2.0) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1358 3f29:B (2.0) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1359 3f29:B (2.0) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1360 3f29:B (2.0) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1361 3f29:B (2.0) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1362 3f29:B (2.0) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1363 3f29:B (2.0) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1364 3fo3:A (1.4) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1365 3fo3:A (1.4) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1366 3fo3:A (1.4) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1367 3fo3:A (1.4) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1368 3fo3:A (1.4) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1369 3fo3:A (1.4) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1370 3fo3:A (1.4) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1371 3fo3:A (1.4) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1372 3fo3:B (1.4) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1373 3fo3:B (1.4) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1374 3fo3:B (1.4) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1375 3fo3:B (1.4) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1376 3fo3:B (1.4) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1377 3fo3:B (1.4) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1378 3fo3:B (1.4) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1379 3fo3:B (1.4) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    1380 3g7f:C (2.5) BS01 HEC ? GO:0005506 ... P07173 19539602
    1381 3g7f:C (2.5) BS02 HEC ? GO:0005506 ... P07173 19539602
    1382 3g7f:C (2.5) BS03 HEC ? GO:0005506 ... P07173 19539602
    1383 3g7f:C (2.5) BS04 HEC ? GO:0005506 ... P07173 19539602
    1384 3gm6:A (1.8) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1385 3gm6:A (1.8) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1386 3gm6:A (1.8) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1387 3gm6:A (1.8) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1388 3gm6:A (1.8) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1389 3gm6:A (1.8) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1390 3gm6:A (1.8) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1391 3gm6:A (1.8) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1392 3gm6:B (1.8) BS01 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1393 3gm6:B (1.8) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1394 3gm6:B (1.8) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1395 3gm6:B (1.8) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1396 3gm6:B (1.8) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1397 3gm6:B (1.8) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1398 3gm6:B (1.8) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1399 3gm6:B (1.8) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    1400 3h1h:D (3.16) BS01 HEC 1.10.2.2 GO:0005743 ... D0VX26 9565029
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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