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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 2blf:B (1.8) BS01 HEC ? GO:0009055 ... Q9LA15 15863498
    802 2bpb:A (1.9) BS02 HEC ? GO:0006790 ... Q9LA16 15863498
    803 2bpb:B (1.9) BS01 HEC ? GO:0009055 ... Q9LA15 15863498
    804 2bpn:A (-1.00) BS01 HEC ? GO:0009055 ... P00131 16527248
    805 2bpn:A (-1.00) BS02 HEC ? GO:0009055 ... P00131 16527248
    806 2bpn:A (-1.00) BS03 HEC ? GO:0009055 ... P00131 16527248
    807 2bpn:A (-1.00) BS04 HEC ? GO:0009055 ... P00131 16527248
    808 2bq4:A (1.68) BS01 HEC ? GO:0009055 ... P94691 16226767
    809 2bq4:A (1.68) BS02 HEC ? GO:0009055 ... P94691 16226767
    810 2bq4:A (1.68) BS03 HEC ? GO:0009055 ... P94691 16226767
    811 2bq4:A (1.68) BS04 HEC ? GO:0009055 ... P94691 16226767
    812 2bq4:B (1.68) BS01 HEC ? GO:0009055 ... P94691 16226767
    813 2bq4:B (1.68) BS02 HEC ? GO:0009055 ... P94691 16226767
    814 2bq4:B (1.68) BS03 HEC ? GO:0009055 ... P94691 16226767
    815 2bq4:B (1.68) BS04 HEC ? GO:0009055 ... P94691 16226767
    816 2c1d:A (1.92) BS01 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    817 2c1d:A (1.92) BS02 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    818 2c1d:B (1.92) BS01 HEC ? GO:0009055 ... Q9LCV0 16297640
    819 2c1d:C (1.92) BS01 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    820 2c1d:C (1.92) BS02 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    821 2c1d:C (1.92) BS05 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    822 2c1d:D (1.92) BS01 HEC ? GO:0009055 ... Q9LCV0 16297640
    823 2c1d:E (1.92) BS01 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    824 2c1d:E (1.92) BS02 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    825 2c1d:F (1.92) BS01 HEC ? GO:0009055 ... Q9LCV0 16297640
    826 2c1d:G (1.92) BS01 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    827 2c1d:G (1.92) BS02 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    828 2c1d:G (1.92) BS03 HEC 2.8.5.2 GO:0004792 ... O33434 16297640
    829 2c1d:H (1.92) BS01 HEC ? GO:0009055 ... Q9LCV0 16297640
    830 2c1u:A (1.95) BS01 HEC N/A GO:0009055 ... N/A 16407070
    831 2c1u:A (1.95) BS02 HEC N/A GO:0009055 ... N/A 16407070
    832 2c1u:B (1.95) BS01 HEC N/A GO:0009055 ... N/A 16407070
    833 2c1u:B (1.95) BS02 HEC N/A GO:0009055 ... N/A 16407070
    834 2c1u:C (1.95) BS01 HEC N/A GO:0009055 ... N/A 16407070
    835 2c1u:C (1.95) BS02 HEC N/A GO:0009055 ... N/A 16407070
    836 2c1u:D (1.95) BS01 HEC N/A GO:0009055 ... N/A 16407070
    837 2c1u:D (1.95) BS02 HEC N/A GO:0009055 ... N/A 16407070
    838 2c1v:A (1.2) BS01 HEC N/A GO:0009055 ... N/A 16407070
    839 2c1v:A (1.2) BS02 HEC N/A GO:0009055 ... N/A 16407070
    840 2c1v:B (1.2) BS01 HEC N/A GO:0009055 ... N/A 16407070
    841 2c1v:B (1.2) BS02 HEC N/A GO:0009055 ... N/A 16407070
    842 2c2c:A (2.0) BS01 HEC ? GO:0009055 ... P0C189 N/A
    843 2c9x:A (1.8) BS02 HEC ? GO:0006790 ... Q9LA16 16893171
    844 2c9x:B (1.8) BS01 HEC ? GO:0009055 ... Q9LA15 16893171
    845 2ca3:B (2.0) BS01 HEC ? GO:0009055 ... Q9LA15 19004819
    846 2ca4:A (2.1) BS02 HEC ? GO:0006790 ... Q9LA16 19004819
    847 2ca4:B (2.1) BS01 HEC ? GO:0009055 ... Q9LA15 19004819
    848 2ccy:A (1.67) BS01 HEC ? GO:0005506 ... P00152 3005592
    849 2ccy:B (1.67) BS01 HEC ? GO:0005506 ... P00152 3005592
    850 2cdv:A (1.8) BS01 HEC ? GO:0009055 ... P00132 6319712
    851 2cdv:A (1.8) BS02 HEC ? GO:0009055 ... P00132 6319712
    852 2cdv:A (1.8) BS03 HEC ? GO:0009055 ... P00132 6319712
    853 2cdv:A (1.8) BS04 HEC ? GO:0009055 ... P00132 6319712
    854 2ce0:A (1.24) BS01 HEC ? GO:0005506 ... Q93VA3 16815443
    855 2ce1:A (1.4) BS01 HEC ? GO:0005506 ... Q93VA3 16815443
    856 2cvc:A (2.0) BS01 HEC ? GO:0009055 ... P24092 N/A
    857 2cvc:A (2.0) BS02 HEC ? GO:0009055 ... P24092 N/A
    858 2cvc:A (2.0) BS03 HEC ? GO:0009055 ... P24092 N/A
    859 2cvc:A (2.0) BS04 HEC ? GO:0009055 ... P24092 N/A
    860 2cvc:A (2.0) BS05 HEC ? GO:0009055 ... P24092 N/A
    861 2cvc:A (2.0) BS06 HEC ? GO:0009055 ... P24092 N/A
    862 2cvc:A (2.0) BS07 HEC ? GO:0009055 ... P24092 N/A
    863 2cvc:A (2.0) BS08 HEC ? GO:0009055 ... P24092 N/A
    864 2cvc:A (2.0) BS09 HEC ? GO:0009055 ... P24092 N/A
    865 2cvc:A (2.0) BS10 HEC ? GO:0009055 ... P24092 N/A
    866 2cvc:A (2.0) BS11 HEC ? GO:0009055 ... P24092 N/A
    867 2cvc:A (2.0) BS12 HEC ? GO:0009055 ... P24092 N/A
    868 2cvc:A (2.0) BS13 HEC ? GO:0009055 ... P24092 N/A
    869 2cvc:A (2.0) BS14 HEC ? GO:0009055 ... P24092 N/A
    870 2cvc:A (2.0) BS15 HEC ? GO:0009055 ... P24092 N/A
    871 2cvc:A (2.0) BS16 HEC ? GO:0009055 ... P24092 N/A
    872 2cxb:A (1.95) BS01 HEC ? GO:0009055 ... P0C0X8 15299423
    873 2cxb:B (1.95) BS01 HEC ? GO:0009055 ... P0C0X8 15299423
    874 2cy3:A (1.7) BS01 HEC ? GO:0009055 ... P00136 7966289
    875 2cy3:A (1.7) BS02 HEC ? GO:0009055 ... P00136 7966289
    876 2cy3:A (1.7) BS03 HEC ? GO:0009055 ... P00136 7966289
    877 2cy3:A (1.7) BS04 HEC ? GO:0009055 ... P00136 7966289
    878 2d0s:A (2.2) BS01 HEC ? GO:0005506 ... Q76IQ6 16681384
    879 2d2c:A (3.8) BS03 HEC ? GO:0009055 ... P83791 16371475
    880 2d2c:B (3.8) BS02 HEC ? GO:0009055 ... P83792 16371475
    881 2d2c:N (3.8) BS03 HEC ? GO:0009055 ... P83791 16371475
    882 2d2c:O (3.8) BS02 HEC ? GO:0009055 ... P83792 16371475
    883 2dvh:A (-1.00) BS01 HEC ? GO:0009055 ... P04032 7844834
    884 2exv:A (1.86) BS01 HEC ? GO:0005506 ... P00099 16452476
    885 2exv:C (1.86) BS01 HEC ? GO:0005506 ... P00099 16452476
    886 2frc:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 8823161
    887 2fw5:A (2.0) BS01 HEC ? GO:0046872 ... Q3J4W3 16700547
    888 2fw5:A (2.0) BS02 HEC ? GO:0046872 ... Q3J4W3 16700547
    889 2fwl:A (-1.00) BS01 HEC ? GO:0009055 ... P04164 16554303
    890 2fwt:A (1.85) BS01 HEC ? GO:0046872 ... Q3J4W3 16700547
    891 2fwt:A (1.85) BS02 HEC ? GO:0046872 ... Q3J4W3 16700547
    892 2gb8:A (-1.00) BS02 HEC 1.11.1.5 GO:0004601 ... P00431 17146057
    893 2gb8:B (-1.00) BS01 HEC ? GO:0005515 ... P00044 17146057
    894 2gc4:D (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    895 2gc4:H (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    896 2gc4:L (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    897 2gc4:P (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    898 2gc7:D (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    899 2gc7:H (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    900 2gc7:L (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    901 2gc7:P (1.9) BS01 HEC ? GO:0005506 ... P29899 N/A
    902 2giw:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 10499099
    903 2h7s:A (2.15) BS01 HEC 1.14.15.1 GO:0004497 ... P00183 16943206
    904 2h7s:C (2.15) BS01 HEC 1.14.15.1 GO:0004497 ... P00183 16943206
    905 2hv4:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 17488096
    906 2i5n:C (1.96) BS01 HEC ? GO:0005506 ... P07173 17159147
    907 2i5n:C (1.96) BS02 HEC ? GO:0005506 ... P07173 17159147
    908 2i5n:C (1.96) BS03 HEC ? GO:0005506 ... P07173 17159147
    909 2i5n:C (1.96) BS04 HEC ? GO:0005506 ... P07173 17159147
    910 2i8f:A (-1.00) BS01 HEC ? GO:0005506 ... P00101 17496029
    911 2ibz:C (2.3) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 17337272
    912 2ibz:C (2.3) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 17337272
    913 2ibz:D (2.3) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 17337272
    914 2j7a:A (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    915 2j7a:A (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    916 2j7a:A (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    917 2j7a:A (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    918 2j7a:A (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    919 2j7a:A (2.3) BS08 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    920 2j7a:A (2.3) BS09 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    921 2j7a:B (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    922 2j7a:B (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    923 2j7a:B (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    924 2j7a:B (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    925 2j7a:B (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    926 2j7a:B (2.3) BS06 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    927 2j7a:C (2.3) BS01 HEC ? GO:0005886 ... Q72EF4 17139260
    928 2j7a:C (2.3) BS02 HEC ? GO:0005886 ... Q72EF4 17139260
    929 2j7a:C (2.3) BS03 HEC ? GO:0005886 ... Q72EF4 17139260
    930 2j7a:C (2.3) BS04 HEC ? GO:0005886 ... Q72EF4 17139260
    931 2j7a:C (2.3) BS05 HEC ? GO:0005886 ... Q72EF4 17139260
    932 2j7a:D (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    933 2j7a:D (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    934 2j7a:D (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    935 2j7a:D (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    936 2j7a:D (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    937 2j7a:D (2.3) BS08 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    938 2j7a:D (2.3) BS09 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    939 2j7a:E (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    940 2j7a:E (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    941 2j7a:E (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    942 2j7a:E (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    943 2j7a:E (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    944 2j7a:E (2.3) BS06 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    945 2j7a:F (2.3) BS01 HEC ? GO:0005886 ... Q72EF4 17139260
    946 2j7a:F (2.3) BS02 HEC ? GO:0005886 ... Q72EF4 17139260
    947 2j7a:F (2.3) BS03 HEC ? GO:0005886 ... Q72EF4 17139260
    948 2j7a:F (2.3) BS04 HEC ? GO:0005886 ... Q72EF4 17139260
    949 2j7a:F (2.3) BS05 HEC ? GO:0005886 ... Q72EF4 17139260
    950 2j7a:G (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    951 2j7a:G (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    952 2j7a:G (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    953 2j7a:G (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    954 2j7a:G (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    955 2j7a:G (2.3) BS08 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    956 2j7a:G (2.3) BS09 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    957 2j7a:H (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    958 2j7a:H (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    959 2j7a:H (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    960 2j7a:H (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    961 2j7a:H (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    962 2j7a:H (2.3) BS06 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    963 2j7a:I (2.3) BS01 HEC ? GO:0005886 ... Q72EF4 17139260
    964 2j7a:I (2.3) BS02 HEC ? GO:0005886 ... Q72EF4 17139260
    965 2j7a:I (2.3) BS03 HEC ? GO:0005886 ... Q72EF4 17139260
    966 2j7a:I (2.3) BS04 HEC ? GO:0005886 ... Q72EF4 17139260
    967 2j7a:I (2.3) BS05 HEC ? GO:0005886 ... Q72EF4 17139260
    968 2j7a:J (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    969 2j7a:J (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    970 2j7a:J (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    971 2j7a:J (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    972 2j7a:J (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    973 2j7a:J (2.3) BS06 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    974 2j7a:J (2.3) BS09 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    975 2j7a:J (2.3) BS10 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    976 2j7a:K (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    977 2j7a:K (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    978 2j7a:K (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    979 2j7a:K (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    980 2j7a:K (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    981 2j7a:K (2.3) BS06 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    982 2j7a:L (2.3) BS01 HEC ? GO:0005886 ... Q72EF4 17139260
    983 2j7a:L (2.3) BS02 HEC ? GO:0005886 ... Q72EF4 17139260
    984 2j7a:L (2.3) BS03 HEC ? GO:0005886 ... Q72EF4 17139260
    985 2j7a:L (2.3) BS04 HEC ? GO:0005886 ... Q72EF4 17139260
    986 2j7a:L (2.3) BS05 HEC ? GO:0005886 ... Q72EF4 17139260
    987 2j7a:M (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    988 2j7a:M (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    989 2j7a:M (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    990 2j7a:M (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    991 2j7a:M (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    992 2j7a:M (2.3) BS08 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    993 2j7a:M (2.3) BS09 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    994 2j7a:N (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    995 2j7a:N (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    996 2j7a:N (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    997 2j7a:N (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    998 2j7a:N (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    999 2j7a:N (2.3) BS06 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1000 2j7a:O (2.3) BS01 HEC ? GO:0005886 ... Q72EF4 17139260
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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