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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 6qyc:B (2.29) BS05 HEC ? GO:0016491 ... P0DSN4 32289252
    3602 6qyc:B (2.29) BS06 HEC ? GO:0016491 ... P0DSN4 32289252
    3603 6qyc:B (2.29) BS07 HEC ? GO:0016491 ... P0DSN4 32289252
    3604 6qyc:B (2.29) BS08 HEC ? GO:0016491 ... P0DSN4 32289252
    3605 6qyc:B (2.29) BS09 HEC ? GO:0016491 ... P0DSN4 32289252
    3606 6qyc:B (2.29) BS10 HEC ? GO:0016491 ... P0DSN4 32289252
    3607 6qyc:B (2.29) BS11 HEC ? GO:0016491 ... P0DSN4 32289252
    3608 6qyc:B (2.29) BS12 HEC ? GO:0016491 ... P0DSN4 32289252
    3609 6qyc:B (2.29) BS16 HEC ? GO:0016491 ... P0DSN4 32289252
    3610 6qyc:C (2.29) BS01 HEC ? GO:0016491 ... P0DSN4 32289252
    3611 6qyc:C (2.29) BS02 HEC ? GO:0016491 ... P0DSN4 32289252
    3612 6qyc:C (2.29) BS03 HEC ? GO:0016491 ... P0DSN4 32289252
    3613 6qyc:C (2.29) BS04 HEC ? GO:0016491 ... P0DSN4 32289252
    3614 6qyc:C (2.29) BS05 HEC ? GO:0016491 ... P0DSN4 32289252
    3615 6qyc:C (2.29) BS06 HEC ? GO:0016491 ... P0DSN4 32289252
    3616 6qyc:C (2.29) BS07 HEC ? GO:0016491 ... P0DSN4 32289252
    3617 6qyc:C (2.29) BS08 HEC ? GO:0016491 ... P0DSN4 32289252
    3618 6qyc:C (2.29) BS09 HEC ? GO:0016491 ... P0DSN4 32289252
    3619 6qyc:C (2.29) BS10 HEC ? GO:0016491 ... P0DSN4 32289252
    3620 6qyc:C (2.29) BS11 HEC ? GO:0016491 ... P0DSN4 32289252
    3621 6qyc:C (2.29) BS12 HEC ? GO:0016491 ... P0DSN4 32289252
    3622 6qyc:C (2.29) BS13 HEC ? GO:0016491 ... P0DSN4 32289252
    3623 6r2q:A (2.697) BS01 HEC ? N/A P0DSN3 32289252
    3624 6r2q:A (2.697) BS02 HEC ? N/A P0DSN3 32289252
    3625 6r2q:A (2.697) BS03 HEC ? N/A P0DSN3 32289252
    3626 6r2q:A (2.697) BS04 HEC ? N/A P0DSN3 32289252
    3627 6r2q:A (2.697) BS05 HEC ? N/A P0DSN3 32289252
    3628 6r2q:A (2.697) BS06 HEC ? N/A P0DSN3 32289252
    3629 6r2q:A (2.697) BS07 HEC ? N/A P0DSN3 32289252
    3630 6r2q:A (2.697) BS08 HEC ? N/A P0DSN3 32289252
    3631 6r2q:A (2.697) BS09 HEC ? N/A P0DSN3 32289252
    3632 6r2q:A (2.697) BS10 HEC ? N/A P0DSN3 32289252
    3633 6r2q:B (2.697) BS01 HEC ? N/A P0DSN2 32289252
    3634 6r2q:B (2.697) BS02 HEC ? N/A P0DSN2 32289252
    3635 6r2q:B (2.697) BS03 HEC ? N/A P0DSN2 32289252
    3636 6r2q:B (2.697) BS04 HEC ? N/A P0DSN2 32289252
    3637 6r2q:B (2.697) BS07 HEC ? N/A P0DSN2 32289252
    3638 6r2q:C (2.697) BS01 HEC ? N/A P0DSN4 32289252
    3639 6r2q:C (2.697) BS02 HEC ? N/A P0DSN4 32289252
    3640 6r2q:C (2.697) BS03 HEC ? N/A P0DSN4 32289252
    3641 6r2q:C (2.697) BS04 HEC ? N/A P0DSN4 32289252
    3642 6r2q:C (2.697) BS05 HEC ? N/A P0DSN4 32289252
    3643 6r2q:C (2.697) BS06 HEC ? N/A P0DSN4 32289252
    3644 6r2q:C (2.697) BS07 HEC ? N/A P0DSN4 32289252
    3645 6r2q:C (2.697) BS08 HEC ? N/A P0DSN4 32289252
    3646 6r2q:C (2.697) BS09 HEC ? N/A P0DSN4 32289252
    3647 6r2q:C (2.697) BS10 HEC ? N/A P0DSN4 32289252
    3648 6r6m:A (1.7) BS01 HEC ? GO:0005506 ... Q1Q7P4 31548310
    3649 6r6m:B (1.7) BS01 HEC ? GO:0009055 ... Q1Q7P3 31548310
    3650 6r6n:A (2.0) BS01 HEC ? GO:0005506 ... Q1Q7P4 31548310
    3651 6r6n:B (2.0) BS01 HEC ? GO:0005506 ... Q1Q7P3 31548310
    3652 6r6o:A (1.9) BS01 HEC ? GO:0005506 ... Q1Q7P4 31548310
    3653 6r6o:B (1.9) BS01 HEC ? GO:0009055 ... Q1Q7P3 31548310
    3654 6rgi:A (2.64) BS01 HEC ? GO:0005515 ... P00044 31254353
    3655 6rqf:A (3.58) BS03 HEC ? GO:0009055 ... P00165 31723268
    3656 6rqf:B (3.58) BS02 HEC ? GO:0005739 ... P00166 31723268
    3657 6rqf:C (3.58) BS02 HEC ? GO:0005506 ... P16013 31723268
    3658 6rqf:K (3.58) BS02 HEC ? GO:0005506 ... P16013 31723268
    3659 6rsi:A (2.48) BS01 HEC ? GO:0005515 ... P00044 31490058
    3660 6rsj:A (2.27) BS01 HEC ? GO:0005515 ... P00044 31490058
    3661 6rsk:A (2.31) BS01 HEC ? GO:0005515 ... P00044 31490058
    3662 6rsk:B (2.31) BS01 HEC ? GO:0005515 ... P00044 31490058
    3663 6rsl:A (1.988) BS01 HEC ? GO:0005515 ... P00044 31490058
    3664 6rsl:B (1.988) BS02 HEC ? GO:0005515 ... P00044 31490058
    3665 6rtd:A (2.36) BS02 HEC 1.3.-.- GO:0006783 ... Q9I609 31173777
    3666 6rtd:B (2.36) BS03 HEC 1.3.-.- GO:0006783 ... Q9I609 31173777
    3667 6rte:A (1.94) BS01 HEC 1.3.-.- GO:0006783 ... Q9I609 31173777
    3668 6rte:B (1.94) BS02 HEC 1.3.-.- GO:0006783 ... Q9I609 31173777
    3669 6s8y:A (2.09) BS01 HEC ? GO:0005515 ... P00044 31460523
    3670 6suv:AaA (2.502) BS01 HEC ? GO:0005515 ... P00004 N/A
    3671 6suv:BaB (2.502) BS02 HEC ? GO:0005515 ... P00004 N/A
    3672 6suv:CaC (2.502) BS02 HEC ? GO:0005515 ... P00004 N/A
    3673 6suv:DaD (2.502) BS02 HEC ? GO:0005515 ... P00004 N/A
    3674 6suv:EaE (2.502) BS01 HEC ? GO:0005515 ... P00004 N/A
    3675 6suv:FaF (2.502) BS02 HEC ? GO:0005515 ... P00004 N/A
    3676 6suv:GaG (2.502) BS02 HEC ? GO:0005515 ... P00004 N/A
    3677 6suv:HaH (2.502) BS02 HEC ? GO:0005515 ... P00004 N/A
    3678 6suy:A (1.75) BS01 HEC ? GO:0005515 ... P00044 31808772
    3679 6suy:B (1.75) BS01 HEC ? GO:0005515 ... P00044 31808772
    3680 6t0b:D (2.8) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 32291341
    3681 6t0b:O (2.8) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 32291341
    3682 6t15:D (3.29) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 32291341
    3683 6t15:O (3.29) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 32291341
    3684 6t5e:A (3.3) BS01 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3685 6t5e:A (3.3) BS02 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3686 6t5e:A (3.3) BS03 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3687 6t5e:A (3.3) BS04 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3688 6t5e:A (3.3) BS05 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3689 6t5e:A (3.3) BS06 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3690 6t5e:A (3.3) BS07 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3691 6t5e:A (3.3) BS08 HEC ? GO:0046872 ... A0A0M2UZI7 33798263
    3692 6tp9:A (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3693 6tp9:A (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3694 6tp9:B (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3695 6tp9:B (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3696 6tp9:C (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3697 6tp9:C (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3698 6tp9:D (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3699 6tp9:D (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3700 6tp9:E (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3701 6tp9:E (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3702 6tp9:F (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3703 6tp9:F (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3704 6tp9:G (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3705 6tp9:H (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3706 6tp9:H (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3707 6tp9:I (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3708 6tp9:I (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3709 6tp9:J (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3710 6tp9:J (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3711 6tp9:K (2.19) BS01 HEC ? GO:0009055 ... Q51479 32254062
    3712 6tp9:K (2.19) BS02 HEC ? GO:0009055 ... Q51479 32254062
    3713 6tpo:A (1.861) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 32510465
    3714 6tr1:A (1.7) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3715 6tr1:C (1.7) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3716 6tr1:E (1.7) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3717 6tsi:A (2.38) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 32510465
    3718 6tsi:B (2.38) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 32510465
    3719 6tsy:A (2.25) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3720 6tsy:B (2.25) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3721 6tsy:C (2.25) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3722 6tsy:D (2.25) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3723 6tsy:E (2.25) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3724 6tsy:F (2.25) BS01 HEC ? GO:0005506 ... P0A3X9 32880593
    3725 6v0a:A (2.55) BS01 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3726 6v0a:A (2.55) BS02 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3727 6v0a:A (2.55) BS03 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3728 6v0a:A (2.55) BS04 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3729 6v0a:A (2.55) BS05 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3730 6v0a:A (2.55) BS06 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3731 6v0a:B (2.55) BS01 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3732 6v0a:B (2.55) BS02 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3733 6v0a:B (2.55) BS03 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3734 6v0a:B (2.55) BS04 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3735 6v0a:B (2.55) BS05 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3736 6v0a:C (2.55) BS01 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3737 6v0a:C (2.55) BS02 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3738 6v0a:C (2.55) BS03 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3739 6v0a:C (2.55) BS04 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3740 6v0a:C (2.55) BS05 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3741 6v0a:D (2.55) BS01 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3742 6v0a:D (2.55) BS02 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3743 6v0a:D (2.55) BS03 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3744 6v0a:D (2.55) BS04 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3745 6v0a:D (2.55) BS05 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3746 6v0a:D (2.55) BS06 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3747 6v0a:E (2.55) BS01 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3748 6v0a:E (2.55) BS02 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3749 6v0a:E (2.55) BS03 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3750 6v0a:E (2.55) BS04 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3751 6v0a:E (2.55) BS05 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3752 6v0a:E (2.55) BS06 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3753 6v0a:F (2.55) BS01 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3754 6v0a:F (2.55) BS02 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3755 6v0a:F (2.55) BS03 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3756 6v0a:F (2.55) BS04 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3757 6v0a:F (2.55) BS05 HEC 1.7.2.2 GO:0042279 ... B3E641 32518164
    3758 6v59:A (1.593) BS01 HEC ? GO:0009055 ... Q2T6B0 32564595
    3759 6v59:A (1.593) BS02 HEC ? GO:0009055 ... Q2T6B0 32564595
    3760 6v59:B (1.593) BS01 HEC ? GO:0009055 ... Q2T6B0 32564595
    3761 6v59:B (1.593) BS02 HEC ? GO:0009055 ... Q2T6B0 32564595
    3762 6vdp:A (2.0) BS01 HEC 1.11.2.5 GO:0006355 ... B0CN28 34163669
    3763 6vdq:A (1.78) BS01 HEC 1.11.2.5 GO:0006355 ... B0CN28 34163669
    3764 6vdz:A (2.95) BS01 HEC 1.11.2.5 GO:0006355 ... B0CN28 34163669
    3765 6ve0:A (3.15) BS01 HEC 1.11.2.5 GO:0006355 ... B0CN28 34163669
    3766 6w1o:E (2.08) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3767 6w1o:F (2.08) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3768 6w1o:V (2.08) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3769 6w1o:e (2.08) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3770 6w1o:f (2.08) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3771 6w1o:v (2.08) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3772 6w1p:E (2.26) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3773 6w1p:F (2.26) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3774 6w1p:V (2.26) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3775 6w1p:e (2.26) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3776 6w1p:f (2.26) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3777 6w1p:v (2.26) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3778 6w1q:E (2.27) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3779 6w1q:F (2.27) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3780 6w1q:V (2.27) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3781 6w1q:e (2.27) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3782 6w1q:f (2.27) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3783 6w1q:v (2.27) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3784 6w1r:E (2.23) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3785 6w1r:F (2.23) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3786 6w1r:V (2.23) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3787 6w1r:e (2.23) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3788 6w1r:f (2.23) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3789 6w1r:v (2.23) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3790 6w1t:E (2.01) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3791 6w1t:F (2.01) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3792 6w1t:V (2.01) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3793 6w1t:e (2.01) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3794 6w1t:f (2.01) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3795 6w1t:v (2.01) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3796 6w1u:E (2.09) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3797 6w1u:F (2.09) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    3798 6w1u:V (2.09) BS01 HEC ? GO:0005506 ... P0A386 32434915
    3799 6w1u:e (2.09) BS01 HEC ? GO:0005506 ... Q8DIP0 32434915
    3800 6w1u:f (2.09) BS01 HEC ? GO:0005506 ... Q8DIN9 32434915
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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