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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 6hif:O (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3202 6hif:O (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3203 6hif:O (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3204 6hif:O (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3205 6hif:O (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3206 6hif:O (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3207 6hif:O (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3208 6hif:O (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3209 6hif:P (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3210 6hif:P (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3211 6hif:P (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3212 6hif:P (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3213 6hif:P (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3214 6hif:P (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3215 6hif:P (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3216 6hif:P (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3217 6hif:P (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3218 6hif:P (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3219 6hif:P (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3220 6hif:P (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3221 6hif:P (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3222 6hif:Q (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3223 6hif:Q (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3224 6hif:Q (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3225 6hif:Q (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3226 6hif:Q (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3227 6hif:Q (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3228 6hif:Q (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3229 6hif:Q (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3230 6hif:Q (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3231 6hif:Q (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3232 6hif:Q (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3233 6hif:Q (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3234 6hif:Q (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3235 6hif:R (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3236 6hif:R (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3237 6hif:R (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3238 6hif:R (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3239 6hif:R (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3240 6hif:R (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3241 6hif:R (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3242 6hif:R (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3243 6hif:R (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3244 6hif:R (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3245 6hif:R (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3246 6hif:R (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3247 6hif:R (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3248 6hif:S (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3249 6hif:S (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3250 6hif:S (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3251 6hif:S (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3252 6hif:S (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3253 6hif:S (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3254 6hif:S (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3255 6hif:S (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3256 6hif:S (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3257 6hif:S (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3258 6hif:S (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3259 6hif:S (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3260 6hif:S (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3261 6hif:T (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3262 6hif:T (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3263 6hif:T (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3264 6hif:T (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3265 6hif:T (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3266 6hif:T (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3267 6hif:T (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3268 6hif:T (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3269 6hif:T (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3270 6hif:T (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3271 6hif:T (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3272 6hif:T (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3273 6hif:T (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3274 6hif:U (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3275 6hif:U (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3276 6hif:U (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3277 6hif:U (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3278 6hif:U (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3279 6hif:U (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3280 6hif:U (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3281 6hif:U (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3282 6hif:U (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3283 6hif:U (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3284 6hif:U (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3285 6hif:U (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3286 6hif:U (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3287 6hif:V (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3288 6hif:V (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3289 6hif:V (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3290 6hif:V (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3291 6hif:V (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3292 6hif:V (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3293 6hif:V (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3294 6hif:V (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3295 6hif:V (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3296 6hif:V (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3297 6hif:V (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3298 6hif:V (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3299 6hif:V (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3300 6hif:W (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3301 6hif:W (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3302 6hif:W (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3303 6hif:W (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3304 6hif:W (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3305 6hif:W (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3306 6hif:W (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3307 6hif:W (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3308 6hif:W (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3309 6hif:W (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3310 6hif:W (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3311 6hif:W (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3312 6hif:W (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3313 6hif:X (2.8) BS01 HEC 1.7.2.8 N/A Q1PW30 31001586
    3314 6hif:X (2.8) BS02 HEC 1.7.2.8 N/A Q1PW30 31001586
    3315 6hif:X (2.8) BS03 HEC 1.7.2.8 N/A Q1PW30 31001586
    3316 6hif:X (2.8) BS04 HEC 1.7.2.8 N/A Q1PW30 31001586
    3317 6hif:X (2.8) BS05 HEC 1.7.2.8 N/A Q1PW30 31001586
    3318 6hif:X (2.8) BS06 HEC 1.7.2.8 N/A Q1PW30 31001586
    3319 6hif:X (2.8) BS07 HEC 1.7.2.8 N/A Q1PW30 31001586
    3320 6hif:X (2.8) BS08 HEC 1.7.2.8 N/A Q1PW30 31001586
    3321 6hif:X (2.8) BS09 HEC 1.7.2.8 N/A Q1PW30 31001586
    3322 6hif:X (2.8) BS10 HEC 1.7.2.8 N/A Q1PW30 31001586
    3323 6hif:X (2.8) BS11 HEC 1.7.2.8 N/A Q1PW30 31001586
    3324 6hif:X (2.8) BS12 HEC 1.7.2.8 N/A Q1PW30 31001586
    3325 6hif:X (2.8) BS13 HEC 1.7.2.8 N/A Q1PW30 31001586
    3326 6hih:A (1.6) BS01 HEC ? GO:0046872 ... G1UBD5 30996884
    3327 6hih:B (1.6) BS01 HEC ? GO:0046872 ... G1UBD5 30996884
    3328 6hiu:A (1.36) BS01 HEC ? N/A G1UBD9 30996884
    3329 6hiu:B (1.36) BS01 HEC ? N/A G1UBD9 30996884
    3330 6hr0:A (1.04) BS01 HEC ? GO:0042597 ... A0A2T3H499 N/A
    3331 6hr0:A (1.04) BS02 HEC ? GO:0042597 ... A0A2T3H499 N/A
    3332 6hr0:A (1.04) BS03 HEC ? GO:0042597 ... A0A2T3H499 N/A
    3333 6hr0:A (1.04) BS04 HEC ? GO:0042597 ... A0A2T3H499 N/A
    3334 6hu9:D (3.35) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 30598554
    3335 6hu9:O (3.35) BS01 HEC 7.1.1.8 GO:0009055 ... P07143 30598554
    3336 6hwh:A (3.3) BS02 HEC ? GO:0005886 ... A0R051 30518849
    3337 6hwh:i (3.3) BS01 HEC 7.1.1.8 GO:0005506 ... A0R050 30518849
    3338 6hwh:j (3.3) BS01 HEC 7.1.1.8 GO:0005506 ... A0R050 30518849
    3339 6hwh:j (3.3) BS02 HEC 7.1.1.8 GO:0005506 ... A0R050 30518849
    3340 6i5b:A (2.2) BS02 HEC ? GO:0042279 ... D5XBK3 31431546
    3341 6i5b:A (2.2) BS03 HEC ? GO:0042279 ... D5XBK3 31431546
    3342 6i5b:A (2.2) BS04 HEC ? GO:0042279 ... D5XBK3 31431546
    3343 6i5b:A (2.2) BS05 HEC ? GO:0042279 ... D5XBK3 31431546
    3344 6i5b:A (2.2) BS06 HEC ? GO:0042279 ... D5XBK3 31431546
    3345 6i5b:A (2.2) BS07 HEC ? GO:0042279 ... D5XBK3 31431546
    3346 6i5b:A (2.2) BS08 HEC ? GO:0042279 ... D5XBK3 31431546
    3347 6i5b:A (2.2) BS09 HEC ? GO:0042279 ... D5XBK3 31431546
    3348 6i5b:A (2.2) BS10 HEC ? GO:0042279 ... D5XBK3 31431546
    3349 6i5b:A (2.2) BS11 HEC ? GO:0042279 ... D5XBK3 31431546
    3350 6i5b:B (2.2) BS01 HEC ? GO:0042279 ... D5XBK3 31431546
    3351 6i5b:B (2.2) BS02 HEC ? GO:0042279 ... D5XBK3 31431546
    3352 6i5b:B (2.2) BS03 HEC ? GO:0042279 ... D5XBK3 31431546
    3353 6i5b:B (2.2) BS04 HEC ? GO:0042279 ... D5XBK3 31431546
    3354 6i5b:B (2.2) BS05 HEC ? GO:0042279 ... D5XBK3 31431546
    3355 6i5b:B (2.2) BS06 HEC ? GO:0042279 ... D5XBK3 31431546
    3356 6i5b:B (2.2) BS07 HEC ? GO:0042279 ... D5XBK3 31431546
    3357 6i5b:B (2.2) BS08 HEC ? GO:0042279 ... D5XBK3 31431546
    3358 6i5b:B (2.2) BS09 HEC ? GO:0042279 ... D5XBK3 31431546
    3359 6i5b:B (2.2) BS10 HEC ? GO:0042279 ... D5XBK3 31431546
    3360 6k7c:A (1.15) BS01 HEC ? GO:0005506 ... D4ZE39 31437585
    3361 6k7c:A (1.15) BS02 HEC ? GO:0005506 ... D4ZE39 31437585
    3362 6k7c:C (1.15) BS01 HEC ? GO:0005506 ... D4ZE39 31437585
    3363 6k7c:C (1.15) BS02 HEC ? GO:0005506 ... D4ZE39 31437585
    3364 6k9i:A (1.8) BS01 HEC ? GO:0005515 ... P00004 N/A
    3365 6k9j:A (0.98) BS01 HEC ? GO:0005515 ... P00004 N/A
    3366 6kls:A (3.3) BS03 HEC ? GO:0005886 ... O66460 31778296
    3367 6kls:C (3.3) BS02 HEC ? GO:0009055 ... O66458 31778296
    3368 6kls:D (3.3) BS01 HEC ? GO:0005886 ... O66460 31778296
    3369 6kls:F (3.3) BS02 HEC ? GO:0009055 ... O66458 31778296
    3370 6klv:C (3.2) BS01 HEC ? GO:0009055 ... O66458 31778296
    3371 6klv:F (3.2) BS01 HEC ? GO:0009055 ... O66458 31778296
    3372 6kq1:A (1.57) BS03 HEC N/A GO:0005506 ... N/A N/A
    3373 6kq1:B (1.57) BS03 HEC N/A GO:0005506 ... N/A N/A
    3374 6lde:A (2.0) BS01 HEC N/A GO:0005506 ... N/A 34168770
    3375 6lde:C (2.0) BS02 HEC N/A GO:0005506 ... N/A 34168770
    3376 6ldf:A (2.35) BS01 HEC N/A GO:0005506 ... N/A 34168770
    3377 6ldf:C (2.35) BS01 HEC N/A GO:0005506 ... N/A 34168770
    3378 6ldg:A (1.98) BS01 HEC N/A GO:0005506 ... N/A 34168770
    3379 6ldg:C (1.98) BS01 HEC N/A GO:0005506 ... N/A 34168770
    3380 6lod:A (3.2) BS01 HEC ? GO:0016020 ... A7NJ87 32832681
    3381 6lod:A (3.2) BS02 HEC ? GO:0016020 ... A7NJ87 32832681
    3382 6lod:A (3.2) BS03 HEC ? GO:0016020 ... A7NJ87 32832681
    3383 6lod:A (3.2) BS04 HEC ? GO:0016020 ... A7NJ87 32832681
    3384 6lod:A (3.2) BS05 HEC ? GO:0016020 ... A7NJ87 32832681
    3385 6lod:B (3.2) BS01 HEC ? GO:0016491 ... A7NJ88 32832681
    3386 6lod:B (3.2) BS02 HEC ? GO:0016491 ... A7NJ88 32832681
    3387 6lod:C (3.2) BS01 HEC ? GO:0005886 ... A7NJ89 32832681
    3388 6lod:E (3.2) BS01 HEC ? GO:0009055 ... A7NJ91 32832681
    3389 6lod:E (3.2) BS02 HEC ? GO:0009055 ... A7NJ91 32832681
    3390 6loe:A (3.5) BS01 HEC ? GO:0016020 ... A7NJ87 32832681
    3391 6loe:A (3.5) BS02 HEC ? GO:0016020 ... A7NJ87 32832681
    3392 6loe:A (3.5) BS03 HEC ? GO:0016020 ... A7NJ87 32832681
    3393 6loe:A (3.5) BS04 HEC ? GO:0016020 ... A7NJ87 32832681
    3394 6loe:A (3.5) BS05 HEC ? GO:0016020 ... A7NJ87 32832681
    3395 6loe:B (3.5) BS01 HEC ? GO:0016491 ... A7NJ88 32832681
    3396 6loe:B (3.5) BS02 HEC ? GO:0016491 ... A7NJ88 32832681
    3397 6loe:C (3.5) BS01 HEC ? GO:0005886 ... A7NJ89 32832681
    3398 6loe:D (3.5) BS01 HEC ? GO:0016020 ... A7NJ90 32832681
    3399 6loe:E (3.5) BS01 HEC ? GO:0009055 ... A7NJ91 32832681
    3400 6loe:E (3.5) BS02 HEC ? GO:0009055 ... A7NJ91 32832681
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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