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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 5gti:V (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    2602 5gti:v (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    2603 5gup:8 (4.0) BS01 HEC N/A GO:0009055 ... N/A 27912063
    2604 5gup:x (4.0) BS01 HEC N/A GO:0009055 ... N/A 27912063
    2605 5guw:A (3.2) BS01 HEC ? GO:0005886 ... Q59646 28847930
    2606 5guw:B (3.2) BS01 HEC 1.7.2.5 GO:0004129 ... Q59647 28847930
    2607 5guw:C (3.2) BS01 HEC ? GO:0005886 ... Q59646 28847930
    2608 5guw:M (3.2) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 28847930
    2609 5guw:N (3.2) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 28847930
    2610 5gux:B (3.3) BS07 HEC 1.7.2.5 GO:0004129 ... Q59647 28847930
    2611 5gux:C (3.3) BS03 HEC ? GO:0005886 ... Q59646 28847930
    2612 5gyr:A (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2613 5gyr:A (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    2614 5gyr:B (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2615 5gyr:E (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2616 5gyr:E (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    2617 5gyr:F (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2618 5gyr:I (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2619 5gyr:J (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2620 5gyr:J (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    2621 5gyr:M (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2622 5gyr:N (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    2623 5gyr:N (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    2624 5h2f:V (2.2) BS01 HEC ? GO:0005506 ... P0A386 28272640
    2625 5h2f:v (2.2) BS01 HEC ? GO:0005506 ... P0A386 28272640
    2626 5iy5:1 (2.0) BS01 HEC ? GO:0005515 ... P00004 27979921
    2627 5iy5:2 (2.0) BS01 HEC ? GO:0005515 ... P00004 27979921
    2628 5jli:A (1.55) BS01 HEC ? GO:0005506 ... P00138 28451315
    2629 5jp7:A (1.26) BS01 HEC ? GO:0005506 ... P00138 28451315
    2630 5jra:A (1.38) BS01 HEC ? GO:0005506 ... P00138 28451315
    2631 5js5:A (1.7) BS01 HEC ? GO:0005506 ... P00138 28451315
    2632 5jsl:A (1.25) BS01 HEC ? GO:0005506 ... P00138 28451315
    2633 5jt4:A (1.25) BS01 HEC ? GO:0005506 ... P00138 28451315
    2634 5jua:A (1.13) BS01 HEC ? GO:0005506 ... P00138 28451315
    2635 5juy:H (4.1) BS01 HEC ? GO:0005739 ... P62894 27697150
    2636 5juy:I (4.1) BS01 HEC ? GO:0005739 ... P62894 27697150
    2637 5juy:J (4.1) BS01 HEC ? GO:0005739 ... P62894 27697150
    2638 5juy:K (4.1) BS01 HEC ? GO:0005739 ... P62894 27697150
    2639 5juy:L (4.1) BS01 HEC ? GO:0005739 ... P62894 27697150
    2640 5juy:M (4.1) BS01 HEC ? GO:0005739 ... P62894 27697150
    2641 5juy:N (4.1) BS01 HEC ? GO:0005739 ... P62894 27697150
    2642 5jve:A (1.12) BS01 HEC ? GO:0005506 ... P00138 28451315
    2643 5kaf:V (3.00001) BS01 HEC ? GO:0005506 ... P0A386 27871088
    2644 5kaf:v (3.00001) BS01 HEC ? GO:0005506 ... P0A386 27871088
    2645 5kai:V (2.80001) BS01 HEC ? GO:0005506 ... P0A386 27871088
    2646 5kai:v (2.80001) BS01 HEC ? GO:0005506 ... P0A386 27871088
    2647 5kke:A (1.701) BS01 HEC ? GO:0005515 ... P00044 27990813
    2648 5kkz:B (2.97) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2649 5kkz:F (2.97) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2650 5kkz:L (2.97) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2651 5kkz:P (2.97) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2652 5kli:B (2.996) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2653 5kli:F (2.996) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2654 5kli:L (2.996) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2655 5kli:P (2.996) BS01 HEC ? GO:0005886 ... Q02760 27758861
    2656 5klu:A (1.99) BS01 HEC ? GO:0005515 ... P00044 27990813
    2657 5klu:A (1.99) BS03 HEC ? GO:0005515 ... P00044 27990813
    2658 5klu:B (1.99) BS01 HEC ? GO:0005515 ... P00044 27990813
    2659 5klu:B (1.99) BS02 HEC ? GO:0005515 ... P00044 27990813
    2660 5klv:D (2.652) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27758861
    2661 5kpf:A (1.698) BS01 HEC ? GO:0005515 ... P00044 29125201
    2662 5kpf:B (1.698) BS01 HEC ? GO:0005515 ... P00044 29125201
    2663 5l31:A (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 27649076
    2664 5l31:B (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 27649076
    2665 5l31:C (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 27649076
    2666 5l31:D (2.4) BS01 HEC ? GO:0005506 ... P0ABE7 27649076
    2667 5l32:A (2.1) BS01 HEC ? GO:0005506 ... P0ABE7 27649076
    2668 5l32:B (2.1) BS01 HEC ? GO:0005506 ... P0ABE7 27649076
    2669 5l32:C (2.1) BS02 HEC ? GO:0005506 ... P0ABE7 27649076
    2670 5l32:D (2.1) BS02 HEC ? GO:0005506 ... P0ABE7 27649076
    2671 5lft:A (1.249) BS01 HEC ? GO:0005515 ... P00044 29125201
    2672 5lo9:A (2.75) BS01 HEC ? GO:0009055 ... W0DW89 27694441
    2673 5lo9:A (2.75) BS02 HEC ? GO:0009055 ... W0DW89 27694441
    2674 5lo9:A (2.75) BS03 HEC ? GO:0009055 ... W0DW89 27694441
    2675 5lo9:A (2.75) BS04 HEC ? GO:0009055 ... W0DW89 27694441
    2676 5lo9:B (2.75) BS01 HEC ? GO:0009055 ... W0DW89 27694441
    2677 5lo9:B (2.75) BS02 HEC ? GO:0009055 ... W0DW89 27694441
    2678 5lo9:B (2.75) BS03 HEC ? GO:0009055 ... W0DW89 27694441
    2679 5lo9:B (2.75) BS04 HEC ? GO:0009055 ... W0DW89 27694441
    2680 5luf:d (9.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27830641
    2681 5luf:p (9.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27830641
    2682 5lyc:A (1.8) BS01 HEC ? GO:0005515 ... P00044 28407337
    2683 5lyc:B (1.8) BS01 HEC ? GO:0005515 ... P00044 28407337
    2684 5m7j:A (3.5) BS01 HEC ? GO:0005506 ... P07173 28248658
    2685 5m7j:A (3.5) BS02 HEC ? GO:0005506 ... P07173 28248658
    2686 5m7j:A (3.5) BS03 HEC ? GO:0005506 ... P07173 28248658
    2687 5m7j:A (3.5) BS04 HEC ? GO:0005506 ... P07173 28248658
    2688 5m7k:A (3.5) BS01 HEC ? GO:0005506 ... P07173 28248658
    2689 5m7k:A (3.5) BS02 HEC ? GO:0005506 ... P07173 28248658
    2690 5m7k:A (3.5) BS03 HEC ? GO:0005506 ... P07173 28248658
    2691 5m7k:A (3.5) BS04 HEC ? GO:0005506 ... P07173 28248658
    2692 5m7l:A (3.6) BS01 HEC ? GO:0005506 ... P07173 28248658
    2693 5m7l:A (3.6) BS02 HEC ? GO:0005506 ... P07173 28248658
    2694 5m7l:A (3.6) BS03 HEC ? GO:0005506 ... P07173 28248658
    2695 5m7l:A (3.6) BS04 HEC ? GO:0005506 ... P07173 28248658
    2696 5mab:A (2.436) BS01 HEC ? GO:0046872 ... A3DTD8 N/A
    2697 5mab:A (2.436) BS02 HEC ? GO:0046872 ... A3DTD8 N/A
    2698 5mab:A (2.436) BS03 HEC ? GO:0046872 ... A3DTD8 N/A
    2699 5mab:B (2.436) BS01 HEC ? GO:0046872 ... A3DTD8 N/A
    2700 5mab:B (2.436) BS02 HEC ? GO:0046872 ... A3DTD8 N/A
    2701 5mab:B (2.436) BS03 HEC ? GO:0046872 ... A3DTD8 N/A
    2702 5mab:C (2.436) BS01 HEC ? GO:0046872 ... A3DTD8 N/A
    2703 5mab:C (2.436) BS02 HEC ? GO:0046872 ... A3DTD8 N/A
    2704 5mab:C (2.436) BS03 HEC ? GO:0046872 ... A3DTD8 N/A
    2705 5mcs:A (-1.00) BS01 HEC ? GO:0005506 ... Q74AE4 28377068
    2706 5mvo:A (2.668) BS01 HEC ? GO:0046872 ... A3DTD8 22949206
    2707 5mvo:A (2.668) BS02 HEC ? GO:0046872 ... A3DTD8 22949206
    2708 5mvo:A (2.668) BS03 HEC ? GO:0046872 ... A3DTD8 22949206
    2709 5mvo:B (2.668) BS01 HEC ? GO:0046872 ... A3DTD8 22949206
    2710 5mvo:B (2.668) BS02 HEC ? GO:0046872 ... A3DTD8 22949206
    2711 5mvo:B (2.668) BS03 HEC ? GO:0046872 ... A3DTD8 22949206
    2712 5mvo:C (2.668) BS01 HEC ? GO:0046872 ... A3DTD8 22949206
    2713 5mvo:C (2.668) BS02 HEC ? GO:0046872 ... A3DTD8 22949206
    2714 5mvo:C (2.668) BS03 HEC ? GO:0046872 ... A3DTD8 22949206
    2715 5mxy:A (1.9) BS01 HEC ? GO:0009055 ... Q30JB5 34471748
    2716 5mxz:A (1.9) BS01 HEC ? GO:0009055 ... Q30JB5 N/A
    2717 5n1t:A (2.6) BS02 HEC ? GO:0016491 ... W0DP88 29968673
    2718 5n1t:B (2.6) BS01 HEC ? GO:0009055 ... W0DKT4 29968673
    2719 5nc0:A (0.91) BS01 HEC ? GO:0005506 ... P00138 29053273
    2720 5ncv:A (1.5) BS01 HEC ? GO:0005515 ... P00044 N/A
    2721 5ncv:B (1.5) BS01 HEC ? GO:0005515 ... P00044 N/A
    2722 5ngx:A (1.06) BS01 HEC ? GO:0005506 ... P00138 29053273
    2723 5nj4:C (2.4) BS01 HEC ? GO:0005506 ... P07173 28781082
    2724 5nj4:C (2.4) BS02 HEC ? GO:0005506 ... P07173 28781082
    2725 5nj4:C (2.4) BS03 HEC ? GO:0005506 ... P07173 28781082
    2726 5nj4:C (2.4) BS04 HEC ? GO:0005506 ... P07173 28781082
    2727 5nmi:D (3.5) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27412848
    2728 5nmi:Q (3.5) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27412848
    2729 5o10:A (1.36) BS01 HEC ? GO:0005515 ... P99999 29083920
    2730 5o10:B (1.36) BS01 HEC ? GO:0005515 ... P99999 29083920
    2731 5o4c:C (2.8) BS01 HEC ? GO:0005506 ... P07173 28781082
    2732 5o4c:C (2.8) BS02 HEC ? GO:0005506 ... P07173 28781082
    2733 5o4c:C (2.8) BS03 HEC ? GO:0005506 ... P07173 28781082
    2734 5o4c:C (2.8) BS04 HEC ? GO:0005506 ... P07173 28781082
    2735 5o64:C (3.3) BS01 HEC ? GO:0005506 ... P07173 28781082
    2736 5o64:C (3.3) BS02 HEC ? GO:0005506 ... P07173 28781082
    2737 5o64:C (3.3) BS03 HEC ? GO:0005506 ... P07173 28781082
    2738 5o64:C (3.3) BS04 HEC ? GO:0005506 ... P07173 28781082
    2739 5obo:A (1.89) BS03 HEC 1.7.2.1 GO:0005507 ... U3G913 N/A
    2740 5ocb:A (1.78) BS03 HEC 1.7.2.1 GO:0005507 ... U3G913 N/A
    2741 5ocf:A (1.8) BS03 HEC 1.7.2.1 GO:0005507 ... U3G913 N/A
    2742 5okd:D (3.1) BS01 HEC 7.1.1.8 GO:0005739 ... P00125 29765610
    2743 5t7h:A (2.003) BS02 HEC ? GO:0005515 ... P00044 27990813
    2744 5t7h:A (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    2745 5t7h:B (2.003) BS02 HEC ? GO:0005515 ... P00044 27990813
    2746 5t7h:B (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    2747 5t7h:C (2.003) BS01 HEC ? GO:0005515 ... P00044 27990813
    2748 5t7h:C (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    2749 5t7h:D (2.003) BS01 HEC ? GO:0005515 ... P00044 27990813
    2750 5t7h:D (2.003) BS03 HEC ? GO:0005515 ... P00044 27990813
    2751 5t8w:A (1.6) BS01 HEC ? GO:0005515 ... P00044 29125201
    2752 5t8w:B (1.6) BS01 HEC ? GO:0005515 ... P00044 29125201
    2753 5tis:V (2.25) BS01 HEC ? GO:0005506 ... P0A386 27871088
    2754 5tis:v (2.25) BS01 HEC ? GO:0005506 ... P0A386 27871088
    2755 5ty3:A (1.25) BS01 HEC ? GO:0005515 ... P99999 28598148
    2756 5ty3:B (1.25) BS01 HEC ? GO:0005515 ... P99999 28598148
    2757 5v2c:V (1.9) BS01 HEC ? GO:0005506 ... P0A387 28741056
    2758 5v2c:v (1.9) BS01 HEC ? GO:0005506 ... P0A387 28741056
    2759 5ws5:V (2.35) BS01 HEC ? GO:0005506 ... P0A387 28219079
    2760 5ws5:v (2.35) BS01 HEC ? GO:0005506 ... P0A387 28219079
    2761 5ws6:V (2.35) BS01 HEC ? GO:0005506 ... P0A387 28219079
    2762 5ws6:v (2.35) BS01 HEC ? GO:0005506 ... P0A387 28219079
    2763 5xdh:A (1.32) BS01 HEC ? GO:0009055 ... I3IL56 29481839
    2764 5xdh:B (1.32) BS01 HEC ? GO:0009055 ... I3IL56 29481839
    2765 5xdh:C (1.32) BS01 HEC ? GO:0009055 ... I3IL56 29481839
    2766 5xdh:D (1.32) BS01 HEC ? GO:0009055 ... I3IL56 29481839
    2767 5xec:A (1.1) BS01 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2768 5xec:A (1.1) BS02 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2769 5xec:C (1.1) BS01 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2770 5xec:C (1.1) BS02 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2771 5xed:A (1.55) BS01 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2772 5xed:A (1.55) BS02 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2773 5xed:C (1.55) BS01 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2774 5xed:C (1.55) BS02 HEC ? GO:0005506 ... P00099
    P15452    		 28660650
    2775 5xte:H (3.4) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    2776 5xte:U (3.4) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    2777 5xth:AH (3.9) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    2778 5xth:AU (3.9) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    2779 5xti:AH (17.4) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    2780 5xti:AU (17.4) BS01 HEC 7.1.1.8 GO:0009055 ... P08574 28844695
    2781 5xzi:A (2.65) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    2782 5xzj:A (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    2783 5xzj:B (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    2784 5xzj:C (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    2785 5xzj:D (1.98) BS01 HEC ? GO:0005506 ... P0ABE7 28992705
    2786 5y5s:C (1.9) BS01 HEC ? GO:0005506 ... D2Z0P5 29618814
    2787 5y5s:C (1.9) BS02 HEC ? GO:0005506 ... D2Z0P5 29618814
    2788 5y5s:C (1.9) BS03 HEC ? GO:0005506 ... D2Z0P5 29618814
    2789 5y5s:C (1.9) BS04 HEC ? GO:0005506 ... D2Z0P5 29618814
    2790 5z25:A (1.7) BS01 HEC ? GO:0009055 ... O67504 29484831
    2791 5ze8:A (1.6) BS01 HEC ? N/A A0A2P1N6U9 29691716
    2792 5ze8:A (1.6) BS02 HEC ? N/A A0A2P1N6U9 29691716
    2793 5ze8:A (1.6) BS03 HEC ? N/A A0A2P1N6U9 29691716
    2794 5ze8:A (1.6) BS04 HEC ? N/A A0A2P1N6U9 29691716
    2795 5ze8:A (1.6) BS05 HEC ? N/A A0A2P1N6U9 29691716
    2796 5zkv:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 N/A
    2797 5zzn:V (2.1) BS01 HEC ? GO:0005506 ... P0A386 30076221
    2798 5zzn:v (2.1) BS01 HEC ? GO:0005506 ... P0A386 30076221
    2799 6a3k:A (1.71) BS01 HEC ? GO:0005506 ... A0A2Z6I6U9 30689055
    2800 6a3l:A (2.14) BS01 HEC ? GO:0005506 ... D4ZGZ2 30689055
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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