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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3gdn:A (1.67) BS03 HBX 4.1.2.10 GO:0016614 ... Q945K2 19256550
    2 3gdn:B (1.67) BS02 HBX 4.1.2.10 GO:0016614 ... Q945K2 19256550
    3 3l4l:A (1.9) BS01 HBX ? GO:0005549 ... Q7PGA3 N/A
    4 4plu:A (1.63) BS01 HBX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 26364929
    5 4plu:B (1.63) BS01 HBX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 26364929
    6 4plu:C (1.63) BS01 HBX 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 26364929
    7 4us8:A (1.49) BS05 HBX 1.2.99.7 GO:0005506 ... Q46509 25261288
    8 4us8:A (1.49) BS06 HBX 1.2.99.7 GO:0005506 ... Q46509 25261288
    9 4us8:A (1.49) BS07 HBX 1.2.99.7 GO:0005506 ... Q46509 25261288
    10 4us8:A (1.49) BS08 HBX 1.2.99.7 GO:0005506 ... Q46509 25261288
    11 5e4b:A (1.5) BS01 HBX ? GO:0016829 ... A0A1C9V3S9 28466867
    12 5e4b:B (1.5) BS01 HBX ? GO:0016829 ... A0A1C9V3S9 28466867
    13 5y02:I (1.8) BS01 HBX ? N/A A0A1L7NZN4 29155493
    14 5y02:L (1.8) BS01 HBX ? N/A A0A1L7NZN4 29155493
    15 6a0o:A (1.55) BS02 HBX 1.1.3.46 GO:0004459 ... O52792 31373572
    16 6a0o:A (1.55) BS03 HBX 1.1.3.46 GO:0004459 ... O52792 31373572
    17 6a0o:A (1.55) BS04 HBX 1.1.3.46 GO:0004459 ... O52792 31373572
    18 6coc:A (1.93) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    19 6coc:B (1.93) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    20 6coc:B (1.93) BS02 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    21 6cod:A (1.8) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    22 6cod:B (1.8) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    23 6cog:A (1.8) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    24 6cog:B (1.8) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    25 6coh:B (2.367) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    26 6coi:A (2.024) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    27 6coi:A (2.024) BS02 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    28 6coi:B (2.024) BS01 HBX 4.1.2.10 GO:0005515 ... Q9LFT6 N/A
    29 6lqy:A (1.598) BS02 HBX 4.1.2.10 GO:0016491 ... O24243 N/A
    30 7bpo:A (1.37) BS01 HBX N/A N/A N/A N/A
    31 7bpo:B (1.37) BS01 HBX N/A N/A N/A N/A
    32 7br1:A (1.25) BS01 HBX ? GO:0016829 ... A0A7I6N400 N/A
    33 7br1:A (1.25) BS02 HBX ? GO:0016829 ... A0A7I6N400 N/A
    34 7br1:B (1.25) BS01 HBX ? GO:0016829 ... A0A7I6N400 N/A
    35 7br1:B (1.25) BS02 HBX ? GO:0016829 ... A0A7I6N400 N/A
    36 7ycb:A (2.01) BS01 HBX ? N/A A0A2Z5XCT7 38526556
    37 7ycb:A (2.01) BS02 HBX ? N/A A0A2Z5XCT7 38526556
    38 7ycb:B (2.01) BS01 HBX ? N/A A0A2Z5XCT7 38526556
    39 7ycb:B (2.01) BS02 HBX ? N/A A0A2Z5XCT7 38526556
    40 7ycb:C (2.01) BS01 HBX ? N/A A0A2Z5XCT7 38526556
    41 7ycb:C (2.01) BS02 HBX ? N/A A0A2Z5XCT7 38526556
    42 7ycb:D (2.01) BS01 HBX ? N/A A0A2Z5XCT7 38526556
    43 7ycb:D (2.01) BS02 HBX ? N/A A0A2Z5XCT7 38526556
    44 8uxu:A (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    45 8uxu:B (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    46 8uxu:C (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    47 8uxu:D (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    48 8uxu:E (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    49 8uxu:F (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    50 8uxu:G (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    51 8uxu:H (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    52 8uxu:I (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    53 8uxu:J (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    54 8uxu:K (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    55 8uxu:L (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    56 8uxu:M (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    57 8uxu:N (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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